Common bottlenose dolphin gammaherpesvirus 1 strain Sarasota

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus; unclassified Rhadinovirus

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 72 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Z1NE30|A0A1Z1NE30_9GAMA DNA replication helicase OS=Common bottlenose dolphin gammaherpesvirus 1 strain Sarasota OX=2022783 GN=ORF44 PE=3 SV=1
MM1 pKa = 8.0AMFLLRR7 pKa = 11.84EE8 pKa = 4.3AKK10 pKa = 9.36VARR13 pKa = 11.84GRR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84PDD19 pKa = 3.2DD20 pKa = 4.05RR21 pKa = 11.84MLPIYY26 pKa = 8.97GAPRR30 pKa = 11.84RR31 pKa = 11.84KK32 pKa = 5.9TTEE35 pKa = 3.65YY36 pKa = 9.32FTFPTHH42 pKa = 7.32LSSLDD47 pKa = 3.8LSDD50 pKa = 4.71SSSLSPSSPLTEE62 pKa = 4.54DD63 pKa = 4.68RR64 pKa = 11.84EE65 pKa = 4.55LCSTAVTSSTLNASVGEE82 pKa = 4.09NGPCRR87 pKa = 11.84LRR89 pKa = 11.84LRR91 pKa = 11.84NLKK94 pKa = 9.51TSEE97 pKa = 3.86AALKK101 pKa = 10.53GGRR104 pKa = 11.84CSMGCGKK111 pKa = 10.11LAYY114 pKa = 9.97QRR116 pKa = 11.84IRR118 pKa = 11.84PLNSKK123 pKa = 9.63IDD125 pKa = 3.7EE126 pKa = 4.58DD127 pKa = 4.47SEE129 pKa = 4.69CEE131 pKa = 3.93EE132 pKa = 5.25GEE134 pKa = 4.49GCGGNAAASALRR146 pKa = 11.84DD147 pKa = 3.74DD148 pKa = 4.67VKK150 pKa = 11.3DD151 pKa = 3.76EE152 pKa = 4.15EE153 pKa = 5.89GEE155 pKa = 4.87DD156 pKa = 4.08GDD158 pKa = 4.88CVEE161 pKa = 5.79GEE163 pKa = 5.0DD164 pKa = 5.07GDD166 pKa = 4.98EE167 pKa = 4.43SDD169 pKa = 4.25SDD171 pKa = 4.39DD172 pKa = 4.08YY173 pKa = 12.07EE174 pKa = 4.27EE175 pKa = 6.01DD176 pKa = 3.78EE177 pKa = 4.45EE178 pKa = 5.59DD179 pKa = 4.53EE180 pKa = 4.13EE181 pKa = 5.63DD182 pKa = 4.67EE183 pKa = 4.24EE184 pKa = 5.63DD185 pKa = 4.67EE186 pKa = 4.6EE187 pKa = 5.63DD188 pKa = 5.23EE189 pKa = 4.3EE190 pKa = 6.34DD191 pKa = 3.56EE192 pKa = 5.2DD193 pKa = 4.63EE194 pKa = 4.43EE195 pKa = 5.33GEE197 pKa = 4.12EE198 pKa = 4.52GEE200 pKa = 4.42EE201 pKa = 4.74DD202 pKa = 4.81EE203 pKa = 5.37EE204 pKa = 6.36DD205 pKa = 3.72EE206 pKa = 5.76DD207 pKa = 5.63DD208 pKa = 5.28EE209 pKa = 4.89EE210 pKa = 6.49DD211 pKa = 3.97EE212 pKa = 4.59EE213 pKa = 6.1SDD215 pKa = 5.54DD216 pKa = 5.38GSEE219 pKa = 4.17LCPGDD224 pKa = 3.7SRR226 pKa = 11.84YY227 pKa = 10.64EE228 pKa = 4.01DD229 pKa = 3.61VSDD232 pKa = 4.55EE233 pKa = 4.55DD234 pKa = 4.69EE235 pKa = 4.38SDD237 pKa = 3.94CFIDD241 pKa = 4.71EE242 pKa = 4.1ADD244 pKa = 3.57KK245 pKa = 11.48VNEE248 pKa = 3.83IRR250 pKa = 11.84VADD253 pKa = 4.11EE254 pKa = 5.64DD255 pKa = 3.75IGSSDD260 pKa = 3.86TEE262 pKa = 4.56SEE264 pKa = 4.39CSSDD268 pKa = 4.72DD269 pKa = 3.69NSPCSSVSRR278 pKa = 11.84NGDD281 pKa = 3.31EE282 pKa = 4.34GDD284 pKa = 3.93VIVISSDD291 pKa = 4.04DD292 pKa = 3.65EE293 pKa = 4.84GEE295 pKa = 4.18SCLRR299 pKa = 11.84KK300 pKa = 9.62AAGDD304 pKa = 3.7GLEE307 pKa = 5.12GSDD310 pKa = 5.19SDD312 pKa = 4.47DD313 pKa = 3.87DD314 pKa = 4.23CVLVSSTYY322 pKa = 10.37KK323 pKa = 10.26RR324 pKa = 11.84RR325 pKa = 11.84LSSSSEE331 pKa = 3.79PQTPDD336 pKa = 2.66ILKK339 pKa = 9.97KK340 pKa = 7.67SARR343 pKa = 11.84MIVYY347 pKa = 10.07SSSSSDD353 pKa = 3.59EE354 pKa = 4.13EE355 pKa = 5.13DD356 pKa = 3.74DD357 pKa = 4.73SGTGSQSSVDD367 pKa = 3.58GSRR370 pKa = 11.84EE371 pKa = 3.78TGTSYY376 pKa = 11.34RR377 pKa = 11.84MPTSYY382 pKa = 11.03LPTRR386 pKa = 11.84PRR388 pKa = 11.84SCKK391 pKa = 9.86KK392 pKa = 9.92SSNRR396 pKa = 11.84YY397 pKa = 7.31SRR399 pKa = 11.84RR400 pKa = 11.84VMHH403 pKa = 6.27KK404 pKa = 7.91TPPLKK409 pKa = 10.89GHH411 pKa = 7.33DD412 pKa = 3.98CYY414 pKa = 11.5NWPWLDD420 pKa = 3.21

Molecular weight: 46.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Z1NEG6|A0A1Z1NEG6_9GAMA Shutoff alkaline exonuclease OS=Common bottlenose dolphin gammaherpesvirus 1 strain Sarasota OX=2022783 GN=ORF37 PE=3 SV=1
MM1 pKa = 7.48SGGVIPGLGDD11 pKa = 3.39ANAVLGTLPARR22 pKa = 11.84CKK24 pKa = 10.36AAGKK28 pKa = 9.42KK29 pKa = 9.82AHH31 pKa = 6.39LKK33 pKa = 10.3VYY35 pKa = 10.5RR36 pKa = 11.84KK37 pKa = 10.09LLGFKK42 pKa = 7.87TLRR45 pKa = 11.84GLSLFLDD52 pKa = 4.17LGQPVEE58 pKa = 4.63SSAKK62 pKa = 9.26HH63 pKa = 5.65RR64 pKa = 11.84IFFEE68 pKa = 3.88VRR70 pKa = 11.84LGRR73 pKa = 11.84RR74 pKa = 11.84IADD77 pKa = 3.38CVLIVKK83 pKa = 9.12TEE85 pKa = 3.87DD86 pKa = 3.03RR87 pKa = 11.84GVCYY91 pKa = 10.07IIEE94 pKa = 5.1LKK96 pKa = 9.68TCMTQNVNIFSPIRR110 pKa = 11.84QAQRR114 pKa = 11.84LQGLAQLSDD123 pKa = 3.49SVKK126 pKa = 10.21FLRR129 pKa = 11.84DD130 pKa = 3.55ALPSGPEE137 pKa = 3.47SWFIIPVLLFKK148 pKa = 11.02SQGSFKK154 pKa = 9.62TLHH157 pKa = 6.12SEE159 pKa = 5.06TYY161 pKa = 9.52QSSSQGARR169 pKa = 11.84TSWEE173 pKa = 3.72RR174 pKa = 11.84LTNFLFVRR182 pKa = 11.84EE183 pKa = 4.21DD184 pKa = 3.71DD185 pKa = 4.1AVTGALRR192 pKa = 11.84QNRR195 pKa = 11.84RR196 pKa = 11.84PRR198 pKa = 11.84VVPDD202 pKa = 3.58RR203 pKa = 11.84NLLGPQVVKK212 pKa = 10.18RR213 pKa = 11.84HH214 pKa = 4.09VRR216 pKa = 11.84KK217 pKa = 9.71RR218 pKa = 11.84RR219 pKa = 11.84PPQRR223 pKa = 11.84GDD225 pKa = 3.2APGAPTARR233 pKa = 11.84TQRR236 pKa = 11.84GPRR239 pKa = 11.84GTGGDD244 pKa = 4.19CEE246 pKa = 5.5LSVQGAAPAGHH257 pKa = 7.19DD258 pKa = 3.7EE259 pKa = 4.23ARR261 pKa = 11.84GVQQ264 pKa = 3.31

Molecular weight: 29.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

72

0

72

35681

83

2739

495.6

55.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.144 ± 0.249

2.416 ± 0.186

4.997 ± 0.168

5.073 ± 0.211

4.568 ± 0.188

5.762 ± 0.201

3.105 ± 0.113

4.975 ± 0.185

4.515 ± 0.184

9.938 ± 0.224

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.071 ± 0.104

4.235 ± 0.142

7.135 ± 0.606

3.43 ± 0.128

5.518 ± 0.163

7.533 ± 0.189

5.908 ± 0.198

6.474 ± 0.236

1.076 ± 0.064

3.125 ± 0.147
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski