Fox fecal rhabdovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A060D558|A0A060D558_9RHAB Alpha 1 protein OS=Fox fecal rhabdovirus OX=1504569 PE=4 SV=1
MM1 pKa = 7.47SPQHH5 pKa = 6.15GASALISGVDD15 pKa = 3.49PDD17 pKa = 4.47HH18 pKa = 6.95FSLIIEE24 pKa = 4.65SYY26 pKa = 9.84PILVGNYY33 pKa = 8.63AATLILTVTLVLSFSLATIIFFFSSVNNLTDD64 pKa = 2.92IRR66 pKa = 11.84GVLIYY71 pKa = 10.6HH72 pKa = 7.24LGNEE76 pKa = 4.04VSEE79 pKa = 4.67FASHH83 pKa = 7.11ALAAVCSAQSTSARR97 pKa = 11.84LTRR100 pKa = 11.84EE101 pKa = 3.85LEE103 pKa = 3.93QFRR106 pKa = 11.84LSGQVTEE113 pKa = 4.48VTPSSGATGEE123 pKa = 3.99LSIPQRR129 pKa = 11.84YY130 pKa = 9.06RR131 pKa = 11.84MLLVEE136 pKa = 5.49KK137 pKa = 10.85DD138 pKa = 3.32MLEE141 pKa = 4.05NEE143 pKa = 4.36MFIAEE148 pKa = 4.23HH149 pKa = 6.23SLVV152 pKa = 3.44

Molecular weight: 16.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A060DA07|A0A060DA07_9RHAB Matrix protein OS=Fox fecal rhabdovirus OX=1504569 PE=4 SV=1
MM1 pKa = 7.67SCLTQDD7 pKa = 2.98LRR9 pKa = 11.84KK10 pKa = 9.76EE11 pKa = 3.46IRR13 pKa = 11.84EE14 pKa = 3.97RR15 pKa = 11.84VSNSISQNPSVTTLIIIEE33 pKa = 4.3VILWVGTLAYY43 pKa = 9.68ISIALGCHH51 pKa = 6.55RR52 pKa = 11.84YY53 pKa = 8.8LQARR57 pKa = 11.84IKK59 pKa = 10.85NSVEE63 pKa = 3.08RR64 pKa = 11.84RR65 pKa = 11.84QRR67 pKa = 11.84FRR69 pKa = 11.84GDD71 pKa = 3.22GVLLPDD77 pKa = 4.42TGPAA81 pKa = 3.32

Molecular weight: 9.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

4815

76

2196

601.9

67.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.207 ± 0.664

1.786 ± 0.267

4.777 ± 0.382

6.459 ± 0.419

3.718 ± 0.436

6.604 ± 0.266

2.388 ± 0.214

6.044 ± 0.64

5.483 ± 0.625

9.844 ± 0.429

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.575 ± 0.217

3.427 ± 0.268

5.732 ± 0.554

2.866 ± 0.133

5.379 ± 0.275

9.076 ± 0.536

5.421 ± 0.23

6.293 ± 0.628

1.848 ± 0.187

3.074 ± 0.328
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski