Devosia sp. Root685

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia; unclassified Devosia

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4002 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0Q8ICC0|A0A0Q8ICC0_9RHIZ NMT1 domain-containing protein OS=Devosia sp. Root685 OX=1736587 GN=ASD83_20100 PE=4 SV=1
MM1 pKa = 6.74EE2 pKa = 4.39TAATTIAGYY11 pKa = 10.72ALYY14 pKa = 10.54GRR16 pKa = 11.84LEE18 pKa = 4.03GDD20 pKa = 3.32VFYY23 pKa = 10.38FALSSAQPINATSTLWLNTDD43 pKa = 3.36ANINTGYY50 pKa = 10.31KK51 pKa = 9.36VWGFAAGAEE60 pKa = 4.29FNVNFGANGVPRR72 pKa = 11.84LYY74 pKa = 10.4TGADD78 pKa = 3.29GQTLVGDD85 pKa = 4.17LTYY88 pKa = 11.57SMSADD93 pKa = 3.12RR94 pKa = 11.84KK95 pKa = 8.61VLEE98 pKa = 3.97IALPKK103 pKa = 10.31SLLGASVSSVGIMADD118 pKa = 2.97INNTIFLPADD128 pKa = 3.54YY129 pKa = 8.78TQAAYY134 pKa = 9.08TITTPVPSVYY144 pKa = 10.5DD145 pKa = 3.52GLLTEE150 pKa = 4.32WTVEE154 pKa = 3.75QRR156 pKa = 11.84LDD158 pKa = 3.45NTPDD162 pKa = 3.33KK163 pKa = 11.18VVAGYY168 pKa = 9.93EE169 pKa = 4.17LYY171 pKa = 11.12GKK173 pKa = 10.06VADD176 pKa = 4.36DD177 pKa = 3.93SFVFGLKK184 pKa = 10.06SAVAIGPNTTFWLNTDD200 pKa = 3.23NNTATGYY207 pKa = 9.48QIWGFAGGAEE217 pKa = 4.12FNVNIGADD225 pKa = 3.78GVARR229 pKa = 11.84LYY231 pKa = 11.07SGADD235 pKa = 3.21GQTLVGTLEE244 pKa = 3.98YY245 pKa = 10.42KK246 pKa = 10.35IAAGGLSMEE255 pKa = 4.35FAVPKK260 pKa = 10.5ALLGPTVTSVVVLADD275 pKa = 3.28INNSVFLPPSYY286 pKa = 11.04SSGGYY291 pKa = 9.96VLTTPLVVPPGPYY304 pKa = 9.99DD305 pKa = 3.58GLLTEE310 pKa = 4.51WTAAQRR316 pKa = 11.84LDD318 pKa = 3.41SGAGVVAGYY327 pKa = 9.72EE328 pKa = 4.01LYY330 pKa = 9.64GTVSEE335 pKa = 4.81DD336 pKa = 3.14KK337 pKa = 10.84FVFALKK343 pKa = 10.3SAVSIGQNTTFWLNTDD359 pKa = 3.51ANVATGHH366 pKa = 6.04QIFGFAGGAEE376 pKa = 4.11FNVNIGADD384 pKa = 3.78GVARR388 pKa = 11.84LYY390 pKa = 11.07SGADD394 pKa = 3.2GQTLVGEE401 pKa = 4.58IDD403 pKa = 3.92HH404 pKa = 7.05KK405 pKa = 10.66IAPDD409 pKa = 3.51GMSMEE414 pKa = 4.33FAVPRR419 pKa = 11.84SLIGASVTAITLLADD434 pKa = 3.54VNDD437 pKa = 4.28TVFLPTTYY445 pKa = 11.35ANGGYY450 pKa = 10.8ALVDD454 pKa = 3.71PASIPPSQFDD464 pKa = 3.57GVLTEE469 pKa = 4.05WTANQRR475 pKa = 11.84LEE477 pKa = 4.21TPMTSVDD484 pKa = 3.21GYY486 pKa = 10.63EE487 pKa = 4.62FYY489 pKa = 11.16GQYY492 pKa = 10.67SDD494 pKa = 3.92GQFTFGFKK502 pKa = 10.12SAVVIGPNTTFWLNTDD518 pKa = 3.58GNVATGTQVFGYY530 pKa = 10.77AGGAEE535 pKa = 4.14FNVNIGSDD543 pKa = 3.74GVARR547 pKa = 11.84LYY549 pKa = 11.04SGAAGQTLVGAIDD562 pKa = 3.88YY563 pKa = 11.08KK564 pKa = 10.92LGPDD568 pKa = 3.25GKK570 pKa = 8.48TIEE573 pKa = 4.27FAVPKK578 pKa = 10.55AMIGASVTSVSILADD593 pKa = 3.51VNDD596 pKa = 4.5SVFLPANYY604 pKa = 10.03LSPAYY609 pKa = 8.84TVYY612 pKa = 11.03DD613 pKa = 4.08PASLPAVTDD622 pKa = 3.37TGNKK626 pKa = 7.9IAIVFSQTTANNYY639 pKa = 8.38FSQMAYY645 pKa = 9.89SQLVMAAQSQAMAAGIPFDD664 pKa = 4.42LVSEE668 pKa = 4.52ADD670 pKa = 3.81LADD673 pKa = 3.78LSKK676 pKa = 10.4MVNYY680 pKa = 10.04DD681 pKa = 3.76AIVFPSFRR689 pKa = 11.84NVPANYY695 pKa = 8.58TAIYY699 pKa = 10.37DD700 pKa = 3.83VLTKK704 pKa = 10.52LVYY707 pKa = 10.39QYY709 pKa = 11.33DD710 pKa = 3.69VSLIAAGDD718 pKa = 3.8FMTNDD723 pKa = 3.86ANNASLPNNAYY734 pKa = 10.23EE735 pKa = 4.73RR736 pKa = 11.84MQTLFGLNRR745 pKa = 11.84TGGEE749 pKa = 4.03DD750 pKa = 3.46GVTVNIEE757 pKa = 3.82ATPAGHH763 pKa = 7.81AITEE767 pKa = 4.59GYY769 pKa = 8.87GANGAIHH776 pKa = 7.48TYY778 pKa = 9.48TGAATSYY785 pKa = 10.54FSAANPNAGSVTVIAEE801 pKa = 3.95QVVNGTTHH809 pKa = 6.09SAVLGTVTGGRR820 pKa = 11.84NVHH823 pKa = 6.53FSTDD827 pKa = 3.21ALLGDD832 pKa = 4.88LNLLGQAIDD841 pKa = 3.63WVNEE845 pKa = 3.94EE846 pKa = 4.24TGGPTVSLNMTRR858 pKa = 11.84NTSLFASRR866 pKa = 11.84NDD868 pKa = 3.1MDD870 pKa = 4.37QSQEE874 pKa = 4.08TYY876 pKa = 10.84DD877 pKa = 3.77VDD879 pKa = 3.68GGIYY883 pKa = 10.47DD884 pKa = 3.66AMLPFLQQWKK894 pKa = 8.25TDD896 pKa = 3.62YY897 pKa = 11.18NFVGSYY903 pKa = 8.66YY904 pKa = 10.99VNVGFNPPDD913 pKa = 3.39QEE915 pKa = 4.7TNWLISSQYY924 pKa = 8.04YY925 pKa = 10.51DD926 pKa = 3.58AMRR929 pKa = 11.84AMGNEE934 pKa = 4.21IGSHH938 pKa = 6.11SYY940 pKa = 7.77THH942 pKa = 7.36PEE944 pKa = 3.83DD945 pKa = 4.05TNFLLPNVLTQALLDD960 pKa = 3.75QRR962 pKa = 11.84IAQYY966 pKa = 9.02ATRR969 pKa = 11.84PGGPGIIGQSLASMSLADD987 pKa = 4.1INAKK991 pKa = 9.44IAQVLAAPNPSALDD1005 pKa = 3.56ATSKK1009 pKa = 11.14AFLEE1013 pKa = 4.18ATYY1016 pKa = 9.83TFQFATARR1024 pKa = 11.84AVLEE1028 pKa = 4.35ANLGYY1033 pKa = 10.42SIGGAAVPGMPEE1045 pKa = 3.7QLLPAQQIIQYY1056 pKa = 10.01YY1057 pKa = 10.13DD1058 pKa = 3.64YY1059 pKa = 11.15LSGGASMLGAGYY1071 pKa = 9.27PGAIGYY1077 pKa = 7.53LTPGADD1083 pKa = 3.4GQVYY1087 pKa = 10.01IAPNMSFDD1095 pKa = 3.77FTLMGWLGLTVAQAEE1110 pKa = 4.55AKK1112 pKa = 8.64WAAEE1116 pKa = 3.88WSQLTANSDD1125 pKa = 3.46MPIVVWPWHH1134 pKa = 6.95DD1135 pKa = 3.69YY1136 pKa = 11.13GVTSWSLDD1144 pKa = 3.09AGQPSPYY1151 pKa = 8.03TAAMFTNFIAAAYY1164 pKa = 8.88AAGTEE1169 pKa = 4.34FVTLADD1175 pKa = 3.8LAARR1179 pKa = 11.84IKK1181 pKa = 10.79AFEE1184 pKa = 3.99RR1185 pKa = 11.84ADD1187 pKa = 3.62FGFSVAGDD1195 pKa = 4.48VITMHH1200 pKa = 7.05ATPQQGQLGTFALNLDD1216 pKa = 3.95DD1217 pKa = 6.61LGGKK1221 pKa = 7.01TIKK1224 pKa = 10.56SVANWYY1230 pKa = 10.43AYY1232 pKa = 10.39DD1233 pKa = 4.22ADD1235 pKa = 4.88SVFLDD1240 pKa = 3.62ADD1242 pKa = 3.66GGTFTVQLGTTVDD1255 pKa = 4.05DD1256 pKa = 3.93VTHH1259 pKa = 5.94ITSIGSRR1266 pKa = 11.84AQLVSLTGDD1275 pKa = 3.4GTNLDD1280 pKa = 3.59FTIAGEE1286 pKa = 4.36GKK1288 pKa = 8.55VTIDD1292 pKa = 3.36VKK1294 pKa = 9.83QTAGFVYY1301 pKa = 9.9QATGATIVSQTGDD1314 pKa = 3.56ILTLDD1319 pKa = 4.01LGAIGSHH1326 pKa = 4.7TVALRR1331 pKa = 11.84QVAINKK1337 pKa = 9.54APTDD1341 pKa = 3.54IVVSNQVALPEE1352 pKa = 3.93NTAARR1357 pKa = 11.84TKK1359 pKa = 10.4IADD1362 pKa = 4.13LAVIDD1367 pKa = 5.22PDD1369 pKa = 3.8TDD1371 pKa = 3.46PLLRR1375 pKa = 11.84MNVVTLSDD1383 pKa = 3.19ARR1385 pKa = 11.84FEE1387 pKa = 4.39VDD1389 pKa = 3.03ASTGALYY1396 pKa = 10.7LKK1398 pKa = 10.45AGQVVNFEE1406 pKa = 4.34AGATIAMTLTATDD1419 pKa = 4.53GPLSFSKK1426 pKa = 10.9ALVLTVVNVNEE1437 pKa = 4.65APTGAPTVAGAAVEE1451 pKa = 4.13NVLLSSGTALIADD1464 pKa = 4.42PDD1466 pKa = 3.98GLGAFTYY1473 pKa = 9.55QWQRR1477 pKa = 11.84GNGTVFTNIAGATAATYY1494 pKa = 10.85RR1495 pKa = 11.84LVQADD1500 pKa = 3.68ADD1502 pKa = 3.81QLVRR1506 pKa = 11.84VAVSYY1511 pKa = 11.08RR1512 pKa = 11.84DD1513 pKa = 3.48GGATTEE1519 pKa = 4.58TVFSAATTQVVDD1531 pKa = 3.61VLANTTLTPLAANTSRR1547 pKa = 11.84TITTAEE1553 pKa = 3.92LVGTGISGTVTINSLTASIGTLVALGGGQWTYY1585 pKa = 10.83TPPLNNDD1592 pKa = 3.39TAVTFSYY1599 pKa = 9.6TASNGTKK1606 pKa = 10.29LAQGTSAMDD1615 pKa = 4.18LLPSNSIMGTAGVDD1629 pKa = 3.23ILAGRR1634 pKa = 11.84ASADD1638 pKa = 3.72TYY1640 pKa = 11.11HH1641 pKa = 6.9GLAGGDD1647 pKa = 4.0TISGGAGDD1655 pKa = 4.96DD1656 pKa = 3.84IIYY1659 pKa = 10.65GDD1661 pKa = 4.58EE1662 pKa = 4.69GNDD1665 pKa = 3.46TANGGDD1671 pKa = 3.73GNDD1674 pKa = 3.3VFFATLNDD1682 pKa = 3.6GNDD1685 pKa = 3.41RR1686 pKa = 11.84YY1687 pKa = 8.97TGNAGSDD1694 pKa = 3.5RR1695 pKa = 11.84YY1696 pKa = 10.66DD1697 pKa = 3.62LSGTTAAATVNLTNGTATSSQTGSDD1722 pKa = 3.2TLATIEE1728 pKa = 4.32NVTGGSGADD1737 pKa = 3.61TITGSSAANVLNGGAGNDD1755 pKa = 3.28ILLGMGGADD1764 pKa = 3.52TLIGGDD1770 pKa = 3.42GADD1773 pKa = 4.08RR1774 pKa = 11.84LTGGAGRR1781 pKa = 11.84DD1782 pKa = 3.81VMTGGADD1789 pKa = 3.18NDD1791 pKa = 4.21TFIFTSTAEE1800 pKa = 4.07MGTTATTRR1808 pKa = 11.84DD1809 pKa = 3.9VITDD1813 pKa = 3.76FTPGQDD1819 pKa = 3.25KK1820 pKa = 10.96FDD1822 pKa = 4.55FSAIDD1827 pKa = 3.71ANTMLSGNQAFTFLATQGAAFTGVRR1852 pKa = 11.84GQLNWSVQDD1861 pKa = 3.76AAGTANDD1868 pKa = 3.69KK1869 pKa = 10.29TIVMGDD1875 pKa = 3.51LNGDD1879 pKa = 4.39RR1880 pKa = 11.84IADD1883 pKa = 3.47FHH1885 pKa = 8.43VEE1887 pKa = 3.93LTGLIQLGVGDD1898 pKa = 5.52FILL1901 pKa = 5.14

Molecular weight: 197.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0Q8IC93|A0A0Q8IC93_9RHIZ Copper homeostasis protein CutC OS=Devosia sp. Root685 OX=1736587 GN=cutC PE=3 SV=1
MM1 pKa = 7.02VPWRR5 pKa = 11.84KK6 pKa = 7.27TLRR9 pKa = 11.84RR10 pKa = 11.84LDD12 pKa = 3.59GAYY15 pKa = 10.0SEE17 pKa = 4.53HH18 pKa = 6.23TLRR21 pKa = 11.84SYY23 pKa = 11.14RR24 pKa = 11.84SDD26 pKa = 3.09FGAFLRR32 pKa = 11.84WCRR35 pKa = 11.84KK36 pKa = 9.09KK37 pKa = 10.55RR38 pKa = 11.84LKK40 pKa = 10.49ALPAASTTIVAYY52 pKa = 9.78IDD54 pKa = 3.57AEE56 pKa = 4.23GMRR59 pKa = 11.84LKK61 pKa = 10.68PSTVKK66 pKa = 10.35RR67 pKa = 11.84RR68 pKa = 11.84LCALRR73 pKa = 11.84RR74 pKa = 11.84IHH76 pKa = 6.72HH77 pKa = 6.71LSDD80 pKa = 4.47LGDD83 pKa = 3.64PTQSEE88 pKa = 4.76EE89 pKa = 3.83VQLAMRR95 pKa = 11.84RR96 pKa = 11.84VRR98 pKa = 11.84RR99 pKa = 11.84AQPSRR104 pKa = 11.84PKK106 pKa = 9.57QAHH109 pKa = 5.93GVTASLRR116 pKa = 11.84DD117 pKa = 3.43QLLAVCGDD125 pKa = 3.92DD126 pKa = 5.68LIGIRR131 pKa = 11.84DD132 pKa = 3.71KK133 pKa = 11.6VLVSVGFDD141 pKa = 3.19TLCRR145 pKa = 11.84RR146 pKa = 11.84GEE148 pKa = 3.99LVALSIEE155 pKa = 4.51DD156 pKa = 4.41FSPTSDD162 pKa = 2.95GRR164 pKa = 11.84HH165 pKa = 4.09TVLVRR170 pKa = 11.84RR171 pKa = 11.84AKK173 pKa = 10.44NDD175 pKa = 3.41PEE177 pKa = 4.57GAGRR181 pKa = 11.84TAKK184 pKa = 10.27LSKK187 pKa = 10.47ASSDD191 pKa = 4.69VFRR194 pKa = 11.84QWLKK198 pKa = 9.82EE199 pKa = 3.63AGIYY203 pKa = 9.81RR204 pKa = 11.84GPLLRR209 pKa = 11.84PVYY212 pKa = 9.99GNRR215 pKa = 11.84VRR217 pKa = 11.84ALYY220 pKa = 10.44LEE222 pKa = 4.68PLTVGRR228 pKa = 11.84VLKK231 pKa = 10.26KK232 pKa = 10.33LCDD235 pKa = 3.6RR236 pKa = 11.84AGLEE240 pKa = 3.86ALTTEE245 pKa = 4.44RR246 pKa = 11.84VSGHH250 pKa = 5.29SLRR253 pKa = 11.84VGAAQQLTINGFGLPQIMRR272 pKa = 11.84AGGWKK277 pKa = 9.75SVNVVARR284 pKa = 11.84YY285 pKa = 9.44IEE287 pKa = 4.62NVDD290 pKa = 3.59LDD292 pKa = 3.61VWKK295 pKa = 10.81

Molecular weight: 33.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4002

0

4002

1280198

41

4685

319.9

34.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.053 ± 0.05

0.641 ± 0.01

5.698 ± 0.032

5.673 ± 0.04

3.967 ± 0.024

8.609 ± 0.045

1.979 ± 0.019

5.596 ± 0.027

3.268 ± 0.031

10.244 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.539 ± 0.019

2.915 ± 0.029

4.992 ± 0.027

3.183 ± 0.02

6.279 ± 0.044

5.515 ± 0.027

5.558 ± 0.035

7.638 ± 0.032

1.343 ± 0.017

2.308 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski