Falsochrobactrum shanghaiense

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Falsochrobactrum

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3608 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A316JD95|A0A316JD95_9RHIZ Peptidase M14 OS=Falsochrobactrum shanghaiense OX=2201899 GN=DKP76_01280 PE=4 SV=1
MM1 pKa = 7.47KK2 pKa = 10.27KK3 pKa = 10.03IILIATTAFFTLPCAAFAQDD23 pKa = 3.22RR24 pKa = 11.84VIIEE28 pKa = 4.13VPRR31 pKa = 11.84TVQDD35 pKa = 3.43YY36 pKa = 10.91VIAHH40 pKa = 6.98PADD43 pKa = 3.62PVIIDD48 pKa = 3.8DD49 pKa = 5.7DD50 pKa = 3.77IGEE53 pKa = 4.54GYY55 pKa = 10.13ILPEE59 pKa = 4.38AVTVIPIPDD68 pKa = 4.46DD69 pKa = 3.8PDD71 pKa = 3.29FGYY74 pKa = 10.15IYY76 pKa = 10.96VDD78 pKa = 3.63GKK80 pKa = 9.9PVIVSMQNRR89 pKa = 11.84RR90 pKa = 11.84VVYY93 pKa = 10.26YY94 pKa = 10.69SEE96 pKa = 5.55GPDD99 pKa = 3.71AGPLIPDD106 pKa = 3.83DD107 pKa = 3.6VVTYY111 pKa = 10.61IEE113 pKa = 4.82TNPSPPVIYY122 pKa = 10.16EE123 pKa = 4.05DD124 pKa = 4.03EE125 pKa = 4.22LVEE128 pKa = 4.86GAILPDD134 pKa = 5.37DD135 pKa = 4.29IPLEE139 pKa = 4.41IIPDD143 pKa = 3.92EE144 pKa = 4.0PTYY147 pKa = 11.12SYY149 pKa = 10.68IYY151 pKa = 10.53VDD153 pKa = 3.53GRR155 pKa = 11.84PALVEE160 pKa = 3.99SGTRR164 pKa = 11.84RR165 pKa = 11.84ILWVRR170 pKa = 3.55

Molecular weight: 18.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A316J5V9|A0A316J5V9_9RHIZ Alcohol dehydrogenase OS=Falsochrobactrum shanghaiense OX=2201899 GN=DKP76_14635 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.09QPSKK9 pKa = 8.8IVRR12 pKa = 11.84KK13 pKa = 9.24RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.55GFRR19 pKa = 11.84ARR21 pKa = 11.84MATTGGRR28 pKa = 11.84KK29 pKa = 9.01VLAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3608

0

3608

1107300

25

3827

306.9

33.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.594 ± 0.05

0.796 ± 0.013

5.645 ± 0.034

6.058 ± 0.041

3.886 ± 0.025

8.222 ± 0.049

2.05 ± 0.02

5.985 ± 0.03

3.854 ± 0.036

9.89 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.633 ± 0.02

3.065 ± 0.024

4.771 ± 0.027

3.321 ± 0.023

6.694 ± 0.039

5.756 ± 0.026

5.116 ± 0.033

7.046 ± 0.035

1.244 ± 0.016

2.373 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski