Haemophilus paracuniculus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1927 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T0AW36|A0A1T0AW36_9PAST DNA topoisomerase OS=Haemophilus paracuniculus OX=734 GN=B0187_00760 PE=3 SV=1
MM1 pKa = 7.73PNWCEE6 pKa = 3.82NKK8 pKa = 10.28LDD10 pKa = 4.76FYY12 pKa = 11.44CPTDD16 pKa = 3.62QLDD19 pKa = 3.6NLKK22 pKa = 10.76NKK24 pKa = 9.92LFSKK28 pKa = 9.67TDD30 pKa = 3.45EE31 pKa = 4.79GNLCLDD37 pKa = 3.95FTKK40 pKa = 10.56LKK42 pKa = 10.2PMPVEE47 pKa = 4.42LDD49 pKa = 3.57IEE51 pKa = 4.46CSSMGTKK58 pKa = 9.67SRR60 pKa = 11.84QLLEE64 pKa = 3.86EE65 pKa = 3.91FQYY68 pKa = 11.48QLFSLEE74 pKa = 4.4LMEE77 pKa = 5.61KK78 pKa = 9.84YY79 pKa = 10.51LPRR82 pKa = 11.84SQVNRR87 pKa = 11.84IYY89 pKa = 10.62TLATQQMWSLNQFVEE104 pKa = 4.36WLQANPSEE112 pKa = 4.14QKK114 pKa = 10.94VLGVDD119 pKa = 3.81LTLGQQYY126 pKa = 10.46IDD128 pKa = 3.73NLAKK132 pKa = 10.82YY133 pKa = 9.83GVEE136 pKa = 3.72TWYY139 pKa = 10.27DD140 pKa = 2.85WHH142 pKa = 6.22CQQWGCKK149 pKa = 7.05WNATTYY155 pKa = 10.68DD156 pKa = 3.12ITEE159 pKa = 4.19SDD161 pKa = 3.59GHH163 pKa = 5.06ITCYY167 pKa = 10.5FDD169 pKa = 4.67TPWSPPRR176 pKa = 11.84EE177 pKa = 4.1WFEE180 pKa = 4.2TLCEE184 pKa = 4.07TFPTIDD190 pKa = 3.36FTLSFFEE197 pKa = 4.55PGWWFAGDD205 pKa = 4.85FIADD209 pKa = 3.64MSGSFYY215 pKa = 10.89EE216 pKa = 4.22NHH218 pKa = 6.78LCDD221 pKa = 5.92DD222 pKa = 4.81EE223 pKa = 5.28IKK225 pKa = 10.06TFAKK229 pKa = 10.47DD230 pKa = 3.36VFGEE234 pKa = 4.16EE235 pKa = 4.35FDD237 pKa = 6.02DD238 pKa = 5.6EE239 pKa = 4.73EE240 pKa = 6.56DD241 pKa = 4.16DD242 pKa = 5.06NEE244 pKa = 4.96GEE246 pKa = 4.11

Molecular weight: 29.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T0AVF5|A0A1T0AVF5_9PAST Uncharacterized protein OS=Haemophilus paracuniculus OX=734 GN=B0187_00740 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.91GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1927

0

1927

593209

30

1816

307.8

34.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.915 ± 0.087

0.995 ± 0.021

4.897 ± 0.04

6.432 ± 0.055

4.467 ± 0.044

6.709 ± 0.056

1.861 ± 0.024

6.59 ± 0.05

6.135 ± 0.055

10.528 ± 0.074

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.304 ± 0.031

4.772 ± 0.059

3.913 ± 0.033

5.13 ± 0.056

4.529 ± 0.047

5.77 ± 0.052

5.133 ± 0.042

6.731 ± 0.049

1.138 ± 0.022

3.052 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski