Campylobacter pinnipediorum subsp. caledonicus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter pinnipediorum

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1649 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1S6U8U0|A0A1S6U8U0_9PROT Outer membrane protein assembly factor BamA OS=Campylobacter pinnipediorum subsp. caledonicus OX=1874362 GN=bamA PE=3 SV=1
MM1 pKa = 7.6TYY3 pKa = 10.93DD4 pKa = 3.86EE5 pKa = 5.47LEE7 pKa = 4.27LDD9 pKa = 3.73AVLLEE14 pKa = 3.9ILEE17 pKa = 4.52NNGSFDD23 pKa = 4.02SLDD26 pKa = 3.86DD27 pKa = 3.85EE28 pKa = 4.65EE29 pKa = 6.12LYY31 pKa = 11.09EE32 pKa = 5.65LIEE35 pKa = 4.3QVAQYY40 pKa = 10.44TDD42 pKa = 3.4GDD44 pKa = 3.62IEE46 pKa = 4.17EE47 pKa = 4.58AFEE50 pKa = 4.27YY51 pKa = 7.54MTQFSPIPKK60 pKa = 9.54KK61 pKa = 10.6RR62 pKa = 11.84FASLFMVV69 pKa = 4.28

Molecular weight: 8.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1S6U7F1|A0A1S6U7F1_9PROT ABC transporter ATP-binding protein OS=Campylobacter pinnipediorum subsp. caledonicus OX=1874362 GN=CPIN18021_0561 PE=4 SV=1
MM1 pKa = 7.28KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.06QPHH8 pKa = 5.76KK9 pKa = 7.92TPKK12 pKa = 9.96KK13 pKa = 7.47RR14 pKa = 11.84THH16 pKa = 5.94GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.07TKK25 pKa = 10.4NGRR28 pKa = 11.84KK29 pKa = 9.05VLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.84GRR39 pKa = 11.84RR40 pKa = 11.84RR41 pKa = 11.84LAVV44 pKa = 3.15

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1649

0

1649

524899

37

5374

318.3

35.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.359 ± 0.067

1.048 ± 0.029

6.16 ± 0.048

6.427 ± 0.072

5.43 ± 0.073

5.829 ± 0.057

1.439 ± 0.026

9.185 ± 0.075

9.657 ± 0.085

9.352 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.311 ± 0.032

6.58 ± 0.069

2.653 ± 0.032

2.873 ± 0.029

3.093 ± 0.041

6.833 ± 0.049

4.661 ± 0.055

5.823 ± 0.051

0.623 ± 0.019

3.664 ± 0.044
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski