Cardiobacterium hominis (strain ATCC 15826 / DSM 8339 / NCTC 10426 / 6573)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium; Cardiobacterium hominis

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2580 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C8NCV9|C8NCV9_CARH6 Type III pantothenate kinase OS=Cardiobacterium hominis (strain ATCC 15826 / DSM 8339 / NCTC 10426 / 6573) OX=638300 GN=coaX PE=3 SV=1
MM1 pKa = 7.24AQITLTLNDD10 pKa = 3.19SSGRR14 pKa = 11.84AVAQYY19 pKa = 11.48NLDD22 pKa = 3.72TAGSALHH29 pKa = 6.73IPAEE33 pKa = 4.35NGVSYY38 pKa = 10.86QFTDD42 pKa = 3.36LATGLGPQNVTTAQQGSDD60 pKa = 3.58LLVSFDD66 pKa = 3.89SGTDD70 pKa = 3.53LVIEE74 pKa = 4.39NYY76 pKa = 9.9FGQGQGALVGVNADD90 pKa = 4.1GGLTSYY96 pKa = 10.55PVTAAPEE103 pKa = 3.77HH104 pKa = 6.14ALASEE109 pKa = 4.53VAAGQTLGSDD119 pKa = 3.97QPPLAPLAVVGGIGG133 pKa = 3.55

Molecular weight: 13.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C8N7T4|C8N7T4_CARH6 CarD-like protein (Fragment) OS=Cardiobacterium hominis (strain ATCC 15826 / DSM 8339 / NCTC 10426 / 6573) OX=638300 GN=mfd PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLSRR13 pKa = 11.84KK14 pKa = 7.51RR15 pKa = 11.84THH17 pKa = 6.36GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.39NGRR29 pKa = 11.84LVLKK33 pKa = 10.32RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.98GRR40 pKa = 11.84HH41 pKa = 5.34RR42 pKa = 11.84LTVV45 pKa = 3.07

Molecular weight: 5.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2580

0

2580

770704

39

2477

298.7

32.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.156 ± 0.081

0.895 ± 0.018

5.729 ± 0.05

5.439 ± 0.056

3.465 ± 0.037

7.443 ± 0.064

2.625 ± 0.032

5.786 ± 0.037

4.134 ± 0.043

10.56 ± 0.088

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.123 ± 0.026

3.653 ± 0.048

4.845 ± 0.042

4.196 ± 0.036

6.117 ± 0.052

5.016 ± 0.04

5.386 ± 0.051

5.839 ± 0.051

1.357 ± 0.027

3.234 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski