Gordonia phage Kuwabara

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 94 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6B9SXM6|A0A6B9SXM6_9CAUD Uncharacterized protein OS=Gordonia phage Kuwabara OX=2696370 GN=57 PE=4 SV=1
MM1 pKa = 7.43TYY3 pKa = 8.71STRR6 pKa = 11.84HH7 pKa = 5.2AVSAGGFRR15 pKa = 11.84WRR17 pKa = 11.84GPDD20 pKa = 3.37YY21 pKa = 10.67PYY23 pKa = 11.09DD24 pKa = 3.84LPGPGDD30 pKa = 4.36ILPEE34 pKa = 5.07DD35 pKa = 4.48PDD37 pKa = 4.11EE38 pKa = 5.63DD39 pKa = 4.15LPLYY43 pKa = 8.95PNPAYY48 pKa = 10.13GQQDD52 pKa = 3.61PWRR55 pKa = 11.84QPP57 pKa = 2.91

Molecular weight: 6.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6B9SXP6|A0A6B9SXP6_9CAUD Uncharacterized protein OS=Gordonia phage Kuwabara OX=2696370 GN=84 PE=4 SV=1
MM1 pKa = 7.46TEE3 pKa = 3.86LRR5 pKa = 11.84TRR7 pKa = 11.84PPTGQPRR14 pKa = 11.84WYY16 pKa = 9.13PIPGFEE22 pKa = 4.3NYY24 pKa = 9.45EE25 pKa = 3.69ISRR28 pKa = 11.84FGHH31 pKa = 4.7VRR33 pKa = 11.84RR34 pKa = 11.84GGRR37 pKa = 11.84ILKK40 pKa = 6.97TFKK43 pKa = 10.08MKK45 pKa = 10.4SGHH48 pKa = 6.6LSISLCVNGVRR59 pKa = 11.84YY60 pKa = 9.33QRR62 pKa = 11.84QVHH65 pKa = 5.76RR66 pKa = 11.84LVLEE70 pKa = 4.44TFDD73 pKa = 4.17GPAPEE78 pKa = 4.55GMEE81 pKa = 3.76ALHH84 pKa = 6.72FNGIPDD90 pKa = 4.0DD91 pKa = 3.94NRR93 pKa = 11.84IEE95 pKa = 3.99NLRR98 pKa = 11.84WGTRR102 pKa = 11.84SANLRR107 pKa = 11.84DD108 pKa = 3.75AVRR111 pKa = 11.84HH112 pKa = 4.18GTYY115 pKa = 10.81NNGHH119 pKa = 5.66MRR121 pKa = 11.84KK122 pKa = 6.53THH124 pKa = 6.38CPQNHH129 pKa = 7.15PYY131 pKa = 10.25SEE133 pKa = 4.47EE134 pKa = 3.33NTYY137 pKa = 10.31RR138 pKa = 11.84YY139 pKa = 9.61RR140 pKa = 11.84GRR142 pKa = 11.84RR143 pKa = 11.84HH144 pKa = 6.27CKK146 pKa = 7.43EE147 pKa = 3.64CSRR150 pKa = 11.84ARR152 pKa = 11.84FRR154 pKa = 11.84AYY156 pKa = 9.95YY157 pKa = 10.37AEE159 pKa = 4.5RR160 pKa = 11.84KK161 pKa = 9.33AKK163 pKa = 10.64RR164 pKa = 11.84NGG166 pKa = 3.08

Molecular weight: 19.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

94

0

94

17375

34

1810

184.8

20.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.471 ± 0.401

0.921 ± 0.136

6.429 ± 0.206

5.882 ± 0.356

2.406 ± 0.15

8.127 ± 0.441

1.945 ± 0.165

4.587 ± 0.182

3.367 ± 0.231

7.845 ± 0.279

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.337 ± 0.137

3.085 ± 0.182

5.686 ± 0.252

3.868 ± 0.18

7.459 ± 0.371

5.853 ± 0.314

6.573 ± 0.325

7.568 ± 0.377

2.095 ± 0.155

2.498 ± 0.116
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski