Amino acid dipepetide frequency for Miscanthus streak virus (isolate 91) (MiSV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
9.643AlaAla: 9.643 ± 2.377
0.964AlaCys: 0.964 ± 1.07
0.0AlaAsp: 0.0 ± 0.0
4.822AlaGlu: 4.822 ± 1.602
3.857AlaPhe: 3.857 ± 3.048
2.893AlaGly: 2.893 ± 1.891
0.964AlaHis: 0.964 ± 0.73
4.822AlaIle: 4.822 ± 0.732
0.964AlaLys: 0.964 ± 0.786
5.786AlaLeu: 5.786 ± 1.04
1.929AlaMet: 1.929 ± 0.842
2.893AlaAsn: 2.893 ± 1.452
5.786AlaPro: 5.786 ± 1.86
3.857AlaGln: 3.857 ± 1.752
0.964AlaArg: 0.964 ± 0.73
8.679AlaSer: 8.679 ± 2.204
3.857AlaThr: 3.857 ± 2.473
4.822AlaVal: 4.822 ± 3.543
0.964AlaTrp: 0.964 ± 0.786
1.929AlaTyr: 1.929 ± 1.506
0.0AlaXaa: 0.0 ± 0.0
Cys
1.929CysAla: 1.929 ± 1.183
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
1.929CysPhe: 1.929 ± 2.14
1.929CysGly: 1.929 ± 1.009
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.964CysLys: 0.964 ± 1.07
3.857CysLeu: 3.857 ± 4.606
0.964CysMet: 0.964 ± 1.07
3.857CysAsn: 3.857 ± 1.299
1.929CysPro: 1.929 ± 0.842
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.964CysSer: 0.964 ± 1.483
2.893CysThr: 2.893 ± 0.762
0.964CysVal: 0.964 ± 1.07
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.822AspAla: 4.822 ± 1.303
0.964AspCys: 0.964 ± 1.483
3.857AspAsp: 3.857 ± 1.752
2.893AspGlu: 2.893 ± 1.271
0.964AspPhe: 0.964 ± 0.73
3.857AspGly: 3.857 ± 1.117
0.0AspHis: 0.0 ± 0.0
2.893AspIle: 2.893 ± 0.762
0.964AspLys: 0.964 ± 0.73
0.964AspLeu: 0.964 ± 0.786
1.929AspMet: 1.929 ± 0.774
0.0AspAsn: 0.0 ± 0.0
3.857AspPro: 3.857 ± 1.117
4.822AspGln: 4.822 ± 1.401
1.929AspArg: 1.929 ± 2.14
2.893AspSer: 2.893 ± 0.762
0.0AspThr: 0.0 ± 0.0
4.822AspVal: 4.822 ± 1.303
2.893AspTrp: 2.893 ± 1.271
1.929AspTyr: 1.929 ± 0.838
0.0AspXaa: 0.0 ± 0.0
Glu
0.964GluAla: 0.964 ± 1.483
1.929GluCys: 1.929 ± 1.506
1.929GluAsp: 1.929 ± 1.009
0.964GluGlu: 0.964 ± 0.73
3.857GluPhe: 3.857 ± 1.685
0.964GluGly: 0.964 ± 0.73
0.0GluHis: 0.0 ± 0.0
0.0GluIle: 0.0 ± 0.0
6.75GluLys: 6.75 ± 2.183
7.715GluLeu: 7.715 ± 3.369
2.893GluMet: 2.893 ± 1.211
0.0GluAsn: 0.0 ± 0.0
1.929GluPro: 1.929 ± 0.842
1.929GluGln: 1.929 ± 0.842
0.0GluArg: 0.0 ± 0.0
0.0GluSer: 0.0 ± 0.0
1.929GluThr: 1.929 ± 1.183
0.0GluVal: 0.0 ± 0.0
2.893GluTrp: 2.893 ± 0.762
5.786GluTyr: 5.786 ± 1.671
0.0GluXaa: 0.0 ± 0.0
Phe
1.929PheAla: 1.929 ± 2.14
0.964PheCys: 0.964 ± 1.07
4.822PheAsp: 4.822 ± 1.401
2.893PheGlu: 2.893 ± 0.762
4.822PhePhe: 4.822 ± 1.401
2.893PheGly: 2.893 ± 1.108
3.857PheHis: 3.857 ± 1.685
2.893PheIle: 2.893 ± 1.774
2.893PheLys: 2.893 ± 0.909
4.822PheLeu: 4.822 ± 1.602
0.964PheMet: 0.964 ± 1.372
0.0PheAsn: 0.0 ± 0.0
4.822PhePro: 4.822 ± 1.401
0.0PheGln: 0.0 ± 0.0
0.964PheArg: 0.964 ± 0.786
1.929PheSer: 1.929 ± 0.842
2.893PheThr: 2.893 ± 1.271
0.964PheVal: 0.964 ± 1.07
0.964PheTrp: 0.964 ± 0.786
0.964PheTyr: 0.964 ± 0.73
0.0PheXaa: 0.0 ± 0.0
Gly
5.786GlyAla: 5.786 ± 3.134
1.929GlyCys: 1.929 ± 1.854
6.75GlyAsp: 6.75 ± 1.979
1.929GlyGlu: 1.929 ± 0.842
2.893GlyPhe: 2.893 ± 1.108
0.964GlyGly: 0.964 ± 0.73
0.0GlyHis: 0.0 ± 0.0
1.929GlyIle: 1.929 ± 1.585
4.822GlyLys: 4.822 ± 2.237
0.0GlyLeu: 0.0 ± 0.0
0.0GlyMet: 0.0 ± 0.0
1.929GlyAsn: 1.929 ± 1.572
8.679GlyPro: 8.679 ± 2.282
0.964GlyGln: 0.964 ± 0.73
1.929GlyArg: 1.929 ± 1.009
3.857GlySer: 3.857 ± 2.023
2.893GlyThr: 2.893 ± 1.7
3.857GlyVal: 3.857 ± 2.473
0.0GlyTrp: 0.0 ± 0.0
3.857GlyTyr: 3.857 ± 1.685
0.0GlyXaa: 0.0 ± 0.0
His
0.964HisAla: 0.964 ± 0.73
2.893HisCys: 2.893 ± 1.108
0.0HisAsp: 0.0 ± 0.0
0.0HisGlu: 0.0 ± 0.0
0.0HisPhe: 0.0 ± 0.0
0.964HisGly: 0.964 ± 1.483
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
2.893HisLys: 2.893 ± 0.762
3.857HisLeu: 3.857 ± 2.009
0.0HisMet: 0.0 ± 0.0
1.929HisAsn: 1.929 ± 1.585
4.822HisPro: 4.822 ± 1.751
0.0HisGln: 0.0 ± 0.0
1.929HisArg: 1.929 ± 1.183
0.0HisSer: 0.0 ± 0.0
1.929HisThr: 1.929 ± 1.506
2.893HisVal: 2.893 ± 1.271
0.0HisTrp: 0.0 ± 0.0
1.929HisTyr: 1.929 ± 1.46
0.0HisXaa: 0.0 ± 0.0
Ile
2.893IleAla: 2.893 ± 1.387
0.964IleCys: 0.964 ± 0.73
3.857IleAsp: 3.857 ± 1.019
0.0IleGlu: 0.0 ± 0.0
1.929IlePhe: 1.929 ± 1.572
2.893IleGly: 2.893 ± 1.462
0.0IleHis: 0.0 ± 0.0
4.822IleIle: 4.822 ± 2.029
5.786IleLys: 5.786 ± 1.83
2.893IleLeu: 2.893 ± 1.759
0.964IleMet: 0.964 ± 1.07
0.0IleAsn: 0.0 ± 0.0
4.822IlePro: 4.822 ± 1.67
3.857IleGln: 3.857 ± 1.685
2.893IleArg: 2.893 ± 0.762
3.857IleSer: 3.857 ± 0.859
1.929IleThr: 1.929 ± 1.183
4.822IleVal: 4.822 ± 1.303
0.0IleTrp: 0.0 ± 0.0
1.929IleTyr: 1.929 ± 1.46
0.0IleXaa: 0.0 ± 0.0
Lys
2.893LysAla: 2.893 ± 1.452
0.0LysCys: 0.0 ± 0.0
4.822LysAsp: 4.822 ± 1.601
4.822LysGlu: 4.822 ± 1.751
6.75LysPhe: 6.75 ± 1.59
1.929LysGly: 1.929 ± 1.183
0.0LysHis: 0.0 ± 0.0
2.893LysIle: 2.893 ± 1.271
6.75LysLys: 6.75 ± 1.826
4.822LysLeu: 4.822 ± 2.007
0.964LysMet: 0.964 ± 0.786
0.0LysAsn: 0.0 ± 0.0
4.822LysPro: 4.822 ± 2.029
1.929LysGln: 1.929 ± 0.842
4.822LysArg: 4.822 ± 3.095
0.0LysSer: 0.0 ± 0.0
4.822LysThr: 4.822 ± 0.732
5.786LysVal: 5.786 ± 1.524
2.893LysTrp: 2.893 ± 1.7
0.964LysTyr: 0.964 ± 0.73
0.0LysXaa: 0.0 ± 0.0
Leu
2.893LeuAla: 2.893 ± 3.21
3.857LeuCys: 3.857 ± 1.117
0.0LeuAsp: 0.0 ± 0.0
0.0LeuGlu: 0.0 ± 0.0
4.822LeuPhe: 4.822 ± 1.751
0.964LeuGly: 0.964 ± 0.786
4.822LeuHis: 4.822 ± 1.22
2.893LeuIle: 2.893 ± 1.387
0.964LeuLys: 0.964 ± 1.483
0.964LeuLeu: 0.964 ± 1.07
2.893LeuMet: 2.893 ± 1.108
2.893LeuAsn: 2.893 ± 0.762
2.893LeuPro: 2.893 ± 1.4
4.822LeuGln: 4.822 ± 1.401
6.75LeuArg: 6.75 ± 2.818
2.893LeuSer: 2.893 ± 1.108
8.679LeuThr: 8.679 ± 2.109
6.75LeuVal: 6.75 ± 1.722
3.857LeuTrp: 3.857 ± 2.513
2.893LeuTyr: 2.893 ± 2.357
0.0LeuXaa: 0.0 ± 0.0
Met
1.929MetAla: 1.929 ± 0.842
0.964MetCys: 0.964 ± 0.786
0.964MetAsp: 0.964 ± 1.483
0.0MetGlu: 0.0 ± 0.0
0.0MetPhe: 0.0 ± 0.0
3.857MetGly: 3.857 ± 2.009
0.0MetHis: 0.0 ± 0.0
1.929MetIle: 1.929 ± 0.842
2.893MetLys: 2.893 ± 1.271
0.964MetLeu: 0.964 ± 0.786
1.929MetMet: 1.929 ± 1.183
0.0MetAsn: 0.0 ± 0.0
0.964MetPro: 0.964 ± 0.786
0.964MetGln: 0.964 ± 0.786
1.929MetArg: 1.929 ± 0.842
0.964MetSer: 0.964 ± 0.786
0.0MetThr: 0.0 ± 0.0
5.786MetVal: 5.786 ± 2.814
0.0MetTrp: 0.0 ± 0.0
0.964MetTyr: 0.964 ± 0.73
0.0MetXaa: 0.0 ± 0.0
Asn
0.964AsnAla: 0.964 ± 0.73
0.0AsnCys: 0.0 ± 0.0
0.964AsnAsp: 0.964 ± 0.73
3.857AsnGlu: 3.857 ± 1.685
0.964AsnPhe: 0.964 ± 0.786
3.857AsnGly: 3.857 ± 1.616
1.929AsnHis: 1.929 ± 0.842
3.857AsnIle: 3.857 ± 1.214
0.964AsnLys: 0.964 ± 0.786
1.929AsnLeu: 1.929 ± 0.842
0.0AsnMet: 0.0 ± 0.0
1.929AsnAsn: 1.929 ± 1.183
2.893AsnPro: 2.893 ± 1.271
2.893AsnGln: 2.893 ± 0.762
3.857AsnArg: 3.857 ± 1.685
2.893AsnSer: 2.893 ± 1.271
5.786AsnThr: 5.786 ± 2.758
3.857AsnVal: 3.857 ± 2.179
0.0AsnTrp: 0.0 ± 0.0
0.964AsnTyr: 0.964 ± 0.73
0.0AsnXaa: 0.0 ± 0.0
Pro
6.75ProAla: 6.75 ± 1.568
0.0ProCys: 0.0 ± 0.0
0.964ProAsp: 0.964 ± 1.483
3.857ProGlu: 3.857 ± 1.685
5.786ProPhe: 5.786 ± 1.671
6.75ProGly: 6.75 ± 1.645
3.857ProHis: 3.857 ± 1.685
1.929ProIle: 1.929 ± 1.183
4.822ProLys: 4.822 ± 1.303
3.857ProLeu: 3.857 ± 3.136
0.964ProMet: 0.964 ± 1.07
4.822ProAsn: 4.822 ± 2.029
8.679ProPro: 8.679 ± 3.324
0.964ProGln: 0.964 ± 0.73
5.786ProArg: 5.786 ± 1.914
7.715ProSer: 7.715 ± 1.985
5.786ProThr: 5.786 ± 1.283
6.75ProVal: 6.75 ± 1.979
0.964ProTrp: 0.964 ± 1.07
0.964ProTyr: 0.964 ± 1.483
0.0ProXaa: 0.0 ± 0.0
Gln
0.964GlnAla: 0.964 ± 1.07
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
3.857GlnGlu: 3.857 ± 1.685
3.857GlnPhe: 3.857 ± 1.685
2.893GlnGly: 2.893 ± 0.762
0.964GlnHis: 0.964 ± 1.483
3.857GlnIle: 3.857 ± 1.299
1.929GlnLys: 1.929 ± 0.838
3.857GlnLeu: 3.857 ± 1.685
1.929GlnMet: 1.929 ± 1.436
0.0GlnAsn: 0.0 ± 0.0
2.893GlnPro: 2.893 ± 1.271
2.893GlnGln: 2.893 ± 1.271
4.822GlnArg: 4.822 ± 1.22
3.857GlnSer: 3.857 ± 1.299
0.0GlnThr: 0.0 ± 0.0
3.857GlnVal: 3.857 ± 0.859
0.964GlnTrp: 0.964 ± 0.73
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.857ArgAla: 3.857 ± 1.299
1.929ArgCys: 1.929 ± 2.14
5.786ArgAsp: 5.786 ± 1.83
0.0ArgGlu: 0.0 ± 0.0
0.964ArgPhe: 0.964 ± 0.786
0.964ArgGly: 0.964 ± 1.07
2.893ArgHis: 2.893 ± 0.909
1.929ArgIle: 1.929 ± 0.842
3.857ArgLys: 3.857 ± 1.299
6.75ArgLeu: 6.75 ± 1.128
1.929ArgMet: 1.929 ± 0.842
4.822ArgAsn: 4.822 ± 2.029
5.786ArgPro: 5.786 ± 2.838
1.929ArgGln: 1.929 ± 1.572
4.822ArgArg: 4.822 ± 2.818
6.75ArgSer: 6.75 ± 2.748
3.857ArgThr: 3.857 ± 2.976
1.929ArgVal: 1.929 ± 1.572
1.929ArgTrp: 1.929 ± 0.842
0.0ArgTyr: 0.0 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.786SerAla: 5.786 ± 1.283
0.964SerCys: 0.964 ± 0.786
2.893SerAsp: 2.893 ± 0.762
2.893SerGlu: 2.893 ± 1.108
0.0SerPhe: 0.0 ± 0.0
3.857SerGly: 3.857 ± 2.473
0.964SerHis: 0.964 ± 1.483
2.893SerIle: 2.893 ± 1.362
3.857SerLys: 3.857 ± 1.685
1.929SerLeu: 1.929 ± 1.183
2.893SerMet: 2.893 ± 1.082
4.822SerAsn: 4.822 ± 1.401
1.929SerPro: 1.929 ± 0.842
2.893SerGln: 2.893 ± 1.387
6.75SerArg: 6.75 ± 0.912
7.715SerSer: 7.715 ± 2.234
5.786SerThr: 5.786 ± 1.895
2.893SerVal: 2.893 ± 2.115
0.0SerTrp: 0.0 ± 0.0
0.964SerTyr: 0.964 ± 0.786
0.0SerXaa: 0.0 ± 0.0
Thr
3.857ThrAla: 3.857 ± 2.023
0.0ThrCys: 0.0 ± 0.0
3.857ThrAsp: 3.857 ± 1.755
4.822ThrGlu: 4.822 ± 1.401
0.0ThrPhe: 0.0 ± 0.0
5.786ThrGly: 5.786 ± 2.901
0.964ThrHis: 0.964 ± 0.73
1.929ThrIle: 1.929 ± 1.572
3.857ThrLys: 3.857 ± 2.009
0.0ThrLeu: 0.0 ± 0.0
1.929ThrMet: 1.929 ± 1.572
5.786ThrAsn: 5.786 ± 1.83
5.786ThrPro: 5.786 ± 1.524
1.929ThrGln: 1.929 ± 2.14
5.786ThrArg: 5.786 ± 1.524
2.893ThrSer: 2.893 ± 1.891
6.75ThrThr: 6.75 ± 3.524
0.964ThrVal: 0.964 ± 0.73
2.893ThrTrp: 2.893 ± 0.909
1.929ThrTyr: 1.929 ± 0.842
0.0ThrXaa: 0.0 ± 0.0
Val
4.822ValAla: 4.822 ± 3.543
3.857ValCys: 3.857 ± 2.009
3.857ValAsp: 3.857 ± 1.019
2.893ValGlu: 2.893 ± 1.452
3.857ValPhe: 3.857 ± 2.009
3.857ValGly: 3.857 ± 2.179
3.857ValHis: 3.857 ± 1.535
1.929ValIle: 1.929 ± 1.009
3.857ValLys: 3.857 ± 2.37
6.75ValLeu: 6.75 ± 0.912
0.0ValMet: 0.0 ± 0.0
2.893ValAsn: 2.893 ± 1.452
3.857ValPro: 3.857 ± 1.367
2.893ValGln: 2.893 ± 0.762
5.786ValArg: 5.786 ± 1.222
2.893ValSer: 2.893 ± 0.762
1.929ValThr: 1.929 ± 1.09
5.786ValVal: 5.786 ± 4.519
0.0ValTrp: 0.0 ± 0.0
3.857ValTyr: 3.857 ± 0.859
0.0ValXaa: 0.0 ± 0.0
Trp
4.822TrpAla: 4.822 ± 1.22
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.964TrpGlu: 0.964 ± 0.786
0.0TrpPhe: 0.0 ± 0.0
0.964TrpGly: 0.964 ± 0.786
1.929TrpHis: 1.929 ± 2.14
1.929TrpIle: 1.929 ± 1.009
1.929TrpLys: 1.929 ± 0.838
0.964TrpLeu: 0.964 ± 0.786
0.0TrpMet: 0.0 ± 0.0
3.857TrpAsn: 3.857 ± 1.685
1.929TrpPro: 1.929 ± 1.183
0.964TrpGln: 0.964 ± 0.786
0.0TrpArg: 0.0 ± 0.0
0.0TrpSer: 0.0 ± 0.0
0.0TrpThr: 0.0 ± 0.0
0.964TrpVal: 0.964 ± 1.07
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.929TyrAla: 1.929 ± 1.572
0.0TyrCys: 0.0 ± 0.0
1.929TyrAsp: 1.929 ± 0.838
0.964TyrGlu: 0.964 ± 0.73
0.964TyrPhe: 0.964 ± 0.786
1.929TyrGly: 1.929 ± 1.585
0.0TyrHis: 0.0 ± 0.0
5.786TyrIle: 5.786 ± 2.542
0.964TyrLys: 0.964 ± 0.786
4.822TyrLeu: 4.822 ± 0.732
0.964TyrMet: 0.964 ± 0.73
1.929TyrAsn: 1.929 ± 1.46
2.893TyrPro: 2.893 ± 0.762
2.893TyrGln: 2.893 ± 0.762
0.964TyrArg: 0.964 ± 1.483
1.929TyrSer: 1.929 ± 0.842
0.0TyrThr: 0.0 ± 0.0
0.964TyrVal: 0.964 ± 0.73
0.0TyrTrp: 0.0 ± 0.0
0.964TyrTyr: 0.964 ± 0.73
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1038 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski