Roseomonas deserti

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5405 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V2GXD0|A0A1V2GXD0_9PROT GNAT family N-acetyltransferase OS=Roseomonas deserti OX=1817963 GN=BKE38_23685 PE=4 SV=1
MM1 pKa = 7.98CIRR4 pKa = 11.84EE5 pKa = 4.03RR6 pKa = 11.84RR7 pKa = 11.84GGAGDD12 pKa = 4.98DD13 pKa = 3.73ILVGGPGYY21 pKa = 10.71DD22 pKa = 3.37ILDD25 pKa = 3.86GGAGIDD31 pKa = 3.78HH32 pKa = 6.15YY33 pKa = 11.2RR34 pKa = 11.84ILAPNDD40 pKa = 4.09GYY42 pKa = 10.61DD43 pKa = 3.26TLAYY47 pKa = 10.61VPGEE51 pKa = 3.96DD52 pKa = 4.35VIEE55 pKa = 4.17ISAAAFGGGLVAGMDD70 pKa = 4.42LGASGYY76 pKa = 8.5YY77 pKa = 10.44LPGATAAASAHH88 pKa = 5.23GQFLSVGGVLSYY100 pKa = 10.64DD101 pKa = 3.66ANGIAPGGLILVARR115 pKa = 11.84TGVPVLFDD123 pKa = 4.24DD124 pKa = 5.35LVIIAA129 pKa = 5.03

Molecular weight: 12.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V2H462|A0A1V2H462_9PROT Uncharacterized protein OS=Roseomonas deserti OX=1817963 GN=BKE38_08620 PE=4 SV=1
MM1 pKa = 7.51LRR3 pKa = 11.84PLVLRR8 pKa = 11.84PLVLRR13 pKa = 11.84PLVLRR18 pKa = 11.84PLVLRR23 pKa = 11.84PLVLRR28 pKa = 11.84PLVLRR33 pKa = 11.84PLVLRR38 pKa = 11.84PLVLRR43 pKa = 11.84RR44 pKa = 11.84LVLRR48 pKa = 11.84RR49 pKa = 11.84LVLRR53 pKa = 11.84RR54 pKa = 11.84LVLRR58 pKa = 11.84PLVLRR63 pKa = 11.84PLVLRR68 pKa = 11.84RR69 pKa = 11.84PVLRR73 pKa = 11.84RR74 pKa = 11.84VVLRR78 pKa = 11.84RR79 pKa = 11.84LVLRR83 pKa = 11.84PLVLRR88 pKa = 11.84PLVLRR93 pKa = 11.84RR94 pKa = 11.84VVLRR98 pKa = 11.84RR99 pKa = 11.84LVLRR103 pKa = 11.84RR104 pKa = 11.84LVLRR108 pKa = 11.84RR109 pKa = 11.84LVLRR113 pKa = 11.84PLVLRR118 pKa = 11.84PLAVSSVKK126 pKa = 10.48YY127 pKa = 9.44MPSIPHH133 pKa = 6.03PRR135 pKa = 11.84LRR137 pKa = 11.84NQLQFSATTFWKK149 pKa = 10.62AFAAARR155 pKa = 3.87

Molecular weight: 18.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5405

0

5405

1725895

26

2417

319.3

34.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.118 ± 0.05

0.788 ± 0.01

5.013 ± 0.028

5.397 ± 0.029

3.317 ± 0.02

9.351 ± 0.036

1.929 ± 0.016

4.059 ± 0.022

2.022 ± 0.023

11.656 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.341 ± 0.013

1.966 ± 0.018

6.091 ± 0.034

3.386 ± 0.019

8.017 ± 0.034

4.63 ± 0.023

4.753 ± 0.022

6.974 ± 0.025

1.435 ± 0.014

1.759 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski