Rodent Torque teno virus 3

Taxonomy: Viruses; Anelloviridae; Wawtorquevirus; Torque teno rodent virus 2

Average proteome isoelectric point is 7.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H4QBE6|A0A2H4QBE6_9VIRU Uncharacterized protein OS=Rodent Torque teno virus 3 OX=2054610 PE=4 SV=1
MM1 pKa = 7.41KK2 pKa = 10.02FSAAAKK8 pKa = 9.5ILLTIFLDD16 pKa = 4.68GVLLPALGRR25 pKa = 11.84PSPLWLQEE33 pKa = 3.99LEE35 pKa = 4.34KK36 pKa = 10.54ATVVPEE42 pKa = 4.03TVEE45 pKa = 4.31NKK47 pKa = 7.29TTPLPGKK54 pKa = 7.35EE55 pKa = 4.06TPQAVVEE62 pKa = 4.55TEE64 pKa = 3.95NQACTCHH71 pKa = 7.32AMEE74 pKa = 5.76PDD76 pKa = 3.45QQKK79 pKa = 10.54EE80 pKa = 4.45MYY82 pKa = 9.61HH83 pKa = 6.36SWILSFSILLGWPEE97 pKa = 3.97GDD99 pKa = 3.99NGFHH103 pKa = 7.48LPRR106 pKa = 11.84EE107 pKa = 4.36QADD110 pKa = 2.69SWMARR115 pKa = 11.84RR116 pKa = 11.84RR117 pKa = 11.84CSQQPSVSPRR127 pKa = 11.84PVLGGEE133 pKa = 4.2VLEE136 pKa = 4.63STVEE140 pKa = 4.04QQQSRR145 pKa = 11.84LL146 pKa = 3.56

Molecular weight: 16.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H4QBE5|A0A2H4QBE5_9VIRU Uncharacterized protein OS=Rodent Torque teno virus 3 OX=2054610 PE=4 SV=1
MM1 pKa = 7.58AFYY4 pKa = 10.63SRR6 pKa = 11.84RR7 pKa = 11.84WGGLRR12 pKa = 11.84RR13 pKa = 11.84YY14 pKa = 9.84GYY16 pKa = 10.04RR17 pKa = 11.84NWRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84PWYY25 pKa = 8.56RR26 pKa = 11.84RR27 pKa = 11.84RR28 pKa = 11.84WRR30 pKa = 11.84TRR32 pKa = 11.84PRR34 pKa = 11.84RR35 pKa = 11.84YY36 pKa = 8.76RR37 pKa = 11.84VRR39 pKa = 11.84RR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84LLRR47 pKa = 11.84RR48 pKa = 11.84KK49 pKa = 7.1TRR51 pKa = 11.84HH52 pKa = 5.01VPVMQWNPINKK63 pKa = 8.79KK64 pKa = 9.04RR65 pKa = 11.84CTIRR69 pKa = 11.84GFCPLVYY76 pKa = 10.47CLGGQKK82 pKa = 10.81GIMDD86 pKa = 3.89FTYY89 pKa = 10.34PGNKK93 pKa = 9.73LILGWLGGGVHH104 pKa = 6.77SSLLSLLDD112 pKa = 3.87LFWEE116 pKa = 4.1EE117 pKa = 4.41RR118 pKa = 11.84YY119 pKa = 8.89WRR121 pKa = 11.84ARR123 pKa = 11.84WSSSNQGYY131 pKa = 9.16NLFRR135 pKa = 11.84YY136 pKa = 9.44YY137 pKa = 11.08GATITLYY144 pKa = 9.2PVMYY148 pKa = 8.1YY149 pKa = 9.9TYY151 pKa = 9.61IFWYY155 pKa = 8.2STEE158 pKa = 3.97EE159 pKa = 3.8LTEE162 pKa = 4.16DD163 pKa = 3.79VEE165 pKa = 4.56PLTVCHH171 pKa = 6.78PSQLLLSKK179 pKa = 10.23HH180 pKa = 5.53HH181 pKa = 6.56VIVHH185 pKa = 6.5RR186 pKa = 11.84LDD188 pKa = 4.4GFQKK192 pKa = 8.88TKK194 pKa = 10.21PIKK197 pKa = 10.47LHH199 pKa = 6.28IKK201 pKa = 9.84PPSQMTGTWHH211 pKa = 6.94TFAAWAKK218 pKa = 10.07QPLLKK223 pKa = 10.06WRR225 pKa = 11.84ISLLDD230 pKa = 3.97IEE232 pKa = 5.05NPWTGFPNDD241 pKa = 3.41QTQGVHH247 pKa = 4.23CTVWARR253 pKa = 11.84HH254 pKa = 4.04KK255 pKa = 9.27TEE257 pKa = 4.4RR258 pKa = 11.84PTEE261 pKa = 4.0ARR263 pKa = 11.84SLDD266 pKa = 3.37LWYY269 pKa = 10.56FPLLDD274 pKa = 5.34DD275 pKa = 4.6GTDD278 pKa = 3.64LSVTMHH284 pKa = 6.9KK285 pKa = 10.39IKK287 pKa = 10.14WNNDD291 pKa = 2.6GTGPKK296 pKa = 9.73YY297 pKa = 10.77DD298 pKa = 4.37EE299 pKa = 4.69ANFWPVAAQFQRR311 pKa = 11.84LLVPFYY317 pKa = 9.61MYY319 pKa = 11.21GFGRR323 pKa = 11.84SATFYY328 pKa = 11.52DD329 pKa = 4.12MNEE332 pKa = 4.29TTHH335 pKa = 6.57EE336 pKa = 4.48PGPTEE341 pKa = 4.06GNMGSFLFLKK351 pKa = 10.12FLNPPCWRR359 pKa = 11.84GSEE362 pKa = 4.25GQFPQFKK369 pKa = 10.66DD370 pKa = 3.64DD371 pKa = 3.61MCFMTFGTVAQLCAQGPWCMKK392 pKa = 10.46RR393 pKa = 11.84IGTNTAGVNISMKK406 pKa = 10.38YY407 pKa = 10.19KK408 pKa = 10.59FYY410 pKa = 10.14FQWGGTPGTNLPPVQPVAGNPGQPLLQSTLRR441 pKa = 11.84WGNTIRR447 pKa = 11.84ADD449 pKa = 3.16IRR451 pKa = 11.84DD452 pKa = 3.86PTTVGEE458 pKa = 4.12EE459 pKa = 4.28VLWPEE464 pKa = 4.96DD465 pKa = 3.83LDD467 pKa = 3.48EE468 pKa = 6.09HH469 pKa = 7.45GIITSQAFRR478 pKa = 11.84RR479 pKa = 11.84ITQPSVSTGSRR490 pKa = 11.84SLGTLGCLRR499 pKa = 11.84PAVSSGRR506 pKa = 11.84KK507 pKa = 8.68RR508 pKa = 11.84PRR510 pKa = 11.84HH511 pKa = 4.95SFEE514 pKa = 3.77EE515 pKa = 4.51SEE517 pKa = 4.4EE518 pKa = 4.32EE519 pKa = 4.08EE520 pKa = 4.62HH521 pKa = 7.49SSSPQEE527 pKa = 3.91TEE529 pKa = 3.79NYY531 pKa = 8.14STEE534 pKa = 4.11EE535 pKa = 4.02EE536 pKa = 4.24EE537 pKa = 5.04EE538 pKa = 3.96EE539 pKa = 4.02MEE541 pKa = 3.96RR542 pKa = 11.84ARR544 pKa = 11.84RR545 pKa = 11.84KK546 pKa = 5.89QHH548 pKa = 4.17RR549 pKa = 11.84RR550 pKa = 11.84KK551 pKa = 10.0RR552 pKa = 11.84KK553 pKa = 9.48RR554 pKa = 11.84LEE556 pKa = 3.47QLLRR560 pKa = 11.84GLSNLGFRR568 pKa = 11.84RR569 pKa = 11.84PMMAGPSGNYY579 pKa = 8.88QKK581 pKa = 11.25SNSII585 pKa = 3.71

Molecular weight: 68.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

871

140

585

290.3

33.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.396 ± 1.922

1.493 ± 0.405

3.674 ± 0.741

6.774 ± 1.15

4.133 ± 0.573

7.577 ± 0.805

2.411 ± 0.339

3.444 ± 0.289

4.822 ± 0.621

9.07 ± 0.886

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.526 ± 0.293

3.33 ± 0.647

7.348 ± 0.623

4.937 ± 0.945

8.955 ± 1.628

7.003 ± 0.919

6.544 ± 0.689

3.789 ± 1.274

3.559 ± 0.404

3.215 ± 1.172
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski