Amino acid dipepetide frequency for Lynx canadensis faeces associated genomovirus CL1 46

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.091AlaAla: 8.091 ± 3.616
0.0AlaCys: 0.0 ± 0.0
3.236AlaAsp: 3.236 ± 0.02
4.854AlaGlu: 4.854 ± 3.695
0.0AlaPhe: 0.0 ± 0.0
8.091AlaGly: 8.091 ± 1.271
0.0AlaHis: 0.0 ± 0.0
4.854AlaIle: 4.854 ± 3.695
6.472AlaLys: 6.472 ± 2.404
1.618AlaLeu: 1.618 ± 1.232
3.236AlaMet: 3.236 ± 2.424
9.709AlaAsn: 9.709 ± 2.503
1.618AlaPro: 1.618 ± 1.212
0.0AlaGln: 0.0 ± 0.0
9.709AlaArg: 9.709 ± 2.503
9.709AlaSer: 9.709 ± 4.828
3.236AlaThr: 3.236 ± 0.02
3.236AlaVal: 3.236 ± 0.02
0.0AlaTrp: 0.0 ± 0.0
3.236AlaTyr: 3.236 ± 2.424
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
1.618CysGlu: 1.618 ± 1.232
1.618CysPhe: 1.618 ± 1.212
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
3.236CysIle: 3.236 ± 2.463
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.618CysAsn: 1.618 ± 1.232
1.618CysPro: 1.618 ± 1.212
1.618CysGln: 1.618 ± 1.232
0.0CysArg: 0.0 ± 0.0
1.618CysSer: 1.618 ± 1.232
1.618CysThr: 1.618 ± 1.212
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.618AspAla: 1.618 ± 1.232
0.0AspCys: 0.0 ± 0.0
4.854AspAsp: 4.854 ± 1.192
3.236AspGlu: 3.236 ± 0.02
3.236AspPhe: 3.236 ± 0.02
1.618AspGly: 1.618 ± 1.232
1.618AspHis: 1.618 ± 1.232
6.472AspIle: 6.472 ± 2.483
1.618AspLys: 1.618 ± 1.212
4.854AspLeu: 4.854 ± 3.695
3.236AspMet: 3.236 ± 0.02
1.618AspAsn: 1.618 ± 1.212
6.472AspPro: 6.472 ± 4.926
1.618AspGln: 1.618 ± 1.212
1.618AspArg: 1.618 ± 1.212
1.618AspSer: 1.618 ± 1.232
3.236AspThr: 3.236 ± 2.424
8.091AspVal: 8.091 ± 1.271
4.854AspTrp: 4.854 ± 1.251
1.618AspTyr: 1.618 ± 1.232
0.0AspXaa: 0.0 ± 0.0
Glu
4.854GluAla: 4.854 ± 1.251
1.618GluCys: 1.618 ± 1.232
1.618GluAsp: 1.618 ± 1.232
3.236GluGlu: 3.236 ± 2.463
4.854GluPhe: 4.854 ± 3.695
0.0GluGly: 0.0 ± 0.0
0.0GluHis: 0.0 ± 0.0
1.618GluIle: 1.618 ± 1.232
1.618GluLys: 1.618 ± 1.212
3.236GluLeu: 3.236 ± 2.463
3.236GluMet: 3.236 ± 1.921
3.236GluAsn: 3.236 ± 0.02
3.236GluPro: 3.236 ± 2.463
0.0GluGln: 0.0 ± 0.0
3.236GluArg: 3.236 ± 0.02
3.236GluSer: 3.236 ± 0.02
1.618GluThr: 1.618 ± 1.232
0.0GluVal: 0.0 ± 0.0
0.0GluTrp: 0.0 ± 0.0
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.236PheAla: 3.236 ± 2.463
1.618PheCys: 1.618 ± 1.212
6.472PheAsp: 6.472 ± 4.926
0.0PheGlu: 0.0 ± 0.0
4.854PhePhe: 4.854 ± 3.695
8.091PheGly: 8.091 ± 3.715
4.854PheHis: 4.854 ± 3.695
0.0PheIle: 0.0 ± 0.0
3.236PheLys: 3.236 ± 2.463
3.236PheLeu: 3.236 ± 0.02
3.236PheMet: 3.236 ± 0.02
1.618PheAsn: 1.618 ± 1.212
1.618PhePro: 1.618 ± 1.232
0.0PheGln: 0.0 ± 0.0
6.472PheArg: 6.472 ± 2.404
6.472PheSer: 6.472 ± 0.04
3.236PheThr: 3.236 ± 0.02
3.236PheVal: 3.236 ± 2.463
0.0PheTrp: 0.0 ± 0.0
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
4.854GlyAla: 4.854 ± 1.192
1.618GlyCys: 1.618 ± 1.232
6.472GlyAsp: 6.472 ± 2.483
1.618GlyGlu: 1.618 ± 1.232
1.618GlyPhe: 1.618 ± 1.232
11.327GlyGly: 11.327 ± 1.291
1.618GlyHis: 1.618 ± 1.212
8.091GlyIle: 8.091 ± 3.715
3.236GlyLys: 3.236 ± 0.02
4.854GlyLeu: 4.854 ± 1.251
3.236GlyMet: 3.236 ± 2.424
4.854GlyAsn: 4.854 ± 1.251
3.236GlyPro: 3.236 ± 0.02
0.0GlyGln: 0.0 ± 0.0
9.709GlyArg: 9.709 ± 2.503
3.236GlySer: 3.236 ± 2.424
8.091GlyThr: 8.091 ± 3.616
4.854GlyVal: 4.854 ± 1.251
0.0GlyTrp: 0.0 ± 0.0
3.236GlyTyr: 3.236 ± 0.02
0.0GlyXaa: 0.0 ± 0.0
His
1.618HisAla: 1.618 ± 1.232
0.0HisCys: 0.0 ± 0.0
1.618HisAsp: 1.618 ± 1.232
3.236HisGlu: 3.236 ± 0.02
3.236HisPhe: 3.236 ± 0.02
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
0.0HisLys: 0.0 ± 0.0
3.236HisLeu: 3.236 ± 2.463
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
1.618HisPro: 1.618 ± 1.232
1.618HisGln: 1.618 ± 1.232
0.0HisArg: 0.0 ± 0.0
0.0HisSer: 0.0 ± 0.0
0.0HisThr: 0.0 ± 0.0
3.236HisVal: 3.236 ± 2.463
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.236IleAla: 3.236 ± 2.463
0.0IleCys: 0.0 ± 0.0
1.618IleAsp: 1.618 ± 1.232
0.0IleGlu: 0.0 ± 0.0
6.472IlePhe: 6.472 ± 4.926
4.854IleGly: 4.854 ± 1.192
1.618IleHis: 1.618 ± 1.232
1.618IleIle: 1.618 ± 1.212
4.854IleLys: 4.854 ± 3.695
3.236IleLeu: 3.236 ± 0.02
0.0IleMet: 0.0 ± 0.0
1.618IleAsn: 1.618 ± 1.212
0.0IlePro: 0.0 ± 0.0
4.854IleGln: 4.854 ± 1.192
1.618IleArg: 1.618 ± 1.212
3.236IleSer: 3.236 ± 0.02
1.618IleThr: 1.618 ± 1.212
6.472IleVal: 6.472 ± 0.04
1.618IleTrp: 1.618 ± 1.232
1.618IleTyr: 1.618 ± 1.212
0.0IleXaa: 0.0 ± 0.0
Lys
0.0LysAla: 0.0 ± 0.0
0.0LysCys: 0.0 ± 0.0
1.618LysAsp: 1.618 ± 1.232
1.618LysGlu: 1.618 ± 1.232
4.854LysPhe: 4.854 ± 1.251
1.618LysGly: 1.618 ± 1.212
0.0LysHis: 0.0 ± 0.0
0.0LysIle: 0.0 ± 0.0
4.854LysLys: 4.854 ± 3.636
1.618LysLeu: 1.618 ± 1.212
0.0LysMet: 0.0 ± 0.8
3.236LysAsn: 3.236 ± 0.02
1.618LysPro: 1.618 ± 1.212
1.618LysGln: 1.618 ± 1.212
6.472LysArg: 6.472 ± 4.847
1.618LysSer: 1.618 ± 1.232
3.236LysThr: 3.236 ± 0.02
1.618LysVal: 1.618 ± 1.212
3.236LysTrp: 3.236 ± 2.463
4.854LysTyr: 4.854 ± 1.251
0.0LysXaa: 0.0 ± 0.0
Leu
6.472LeuAla: 6.472 ± 0.04
1.618LeuCys: 1.618 ± 1.232
3.236LeuAsp: 3.236 ± 2.463
3.236LeuGlu: 3.236 ± 2.463
3.236LeuPhe: 3.236 ± 0.02
6.472LeuGly: 6.472 ± 4.926
0.0LeuHis: 0.0 ± 0.0
1.618LeuIle: 1.618 ± 1.232
0.0LeuLys: 0.0 ± 0.0
0.0LeuLeu: 0.0 ± 0.0
0.0LeuMet: 0.0 ± 0.0
3.236LeuAsn: 3.236 ± 2.424
1.618LeuPro: 1.618 ± 1.212
0.0LeuGln: 0.0 ± 0.0
1.618LeuArg: 1.618 ± 1.212
3.236LeuSer: 3.236 ± 2.424
3.236LeuThr: 3.236 ± 2.424
8.091LeuVal: 8.091 ± 1.271
6.472LeuTrp: 6.472 ± 2.404
4.854LeuTyr: 4.854 ± 1.192
0.0LeuXaa: 0.0 ± 0.0
Met
3.236MetAla: 3.236 ± 2.424
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
1.618MetGlu: 1.618 ± 1.232
0.0MetPhe: 0.0 ± 0.0
3.236MetGly: 3.236 ± 0.02
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
1.618MetLeu: 1.618 ± 1.212
0.0MetMet: 0.0 ± 0.0
1.618MetAsn: 1.618 ± 1.212
1.618MetPro: 1.618 ± 1.232
0.0MetGln: 0.0 ± 0.0
1.618MetArg: 1.618 ± 1.212
4.854MetSer: 4.854 ± 1.192
3.236MetThr: 3.236 ± 2.424
1.618MetVal: 1.618 ± 1.232
0.0MetTrp: 0.0 ± 0.0
3.236MetTyr: 3.236 ± 0.02
0.0MetXaa: 0.0 ± 0.0
Asn
4.854AsnAla: 4.854 ± 1.251
3.236AsnCys: 3.236 ± 0.02
1.618AsnAsp: 1.618 ± 1.212
0.0AsnGlu: 0.0 ± 0.0
1.618AsnPhe: 1.618 ± 1.212
6.472AsnGly: 6.472 ± 0.04
0.0AsnHis: 0.0 ± 0.0
3.236AsnIle: 3.236 ± 0.02
1.618AsnLys: 1.618 ± 1.212
8.091AsnLeu: 8.091 ± 3.616
1.618AsnMet: 1.618 ± 1.212
3.236AsnAsn: 3.236 ± 2.424
1.618AsnPro: 1.618 ± 1.232
3.236AsnGln: 3.236 ± 2.424
0.0AsnArg: 0.0 ± 0.0
1.618AsnSer: 1.618 ± 1.232
6.472AsnThr: 6.472 ± 0.04
0.0AsnVal: 0.0 ± 0.0
0.0AsnTrp: 0.0 ± 0.0
1.618AsnTyr: 1.618 ± 1.232
0.0AsnXaa: 0.0 ± 0.0
Pro
1.618ProAla: 1.618 ± 1.232
0.0ProCys: 0.0 ± 0.0
1.618ProAsp: 1.618 ± 1.232
4.854ProGlu: 4.854 ± 3.695
4.854ProPhe: 4.854 ± 1.251
4.854ProGly: 4.854 ± 3.636
1.618ProHis: 1.618 ± 1.232
0.0ProIle: 0.0 ± 0.0
0.0ProLys: 0.0 ± 0.0
1.618ProLeu: 1.618 ± 1.212
1.618ProMet: 1.618 ± 1.212
3.236ProAsn: 3.236 ± 0.02
0.0ProPro: 0.0 ± 0.0
0.0ProGln: 0.0 ± 0.0
3.236ProArg: 3.236 ± 2.463
4.854ProSer: 4.854 ± 3.695
3.236ProThr: 3.236 ± 2.424
1.618ProVal: 1.618 ± 1.212
1.618ProTrp: 1.618 ± 1.212
4.854ProTyr: 4.854 ± 1.251
0.0ProXaa: 0.0 ± 0.0
Gln
0.0GlnAla: 0.0 ± 0.0
0.0GlnCys: 0.0 ± 0.0
3.236GlnAsp: 3.236 ± 2.424
0.0GlnGlu: 0.0 ± 0.0
0.0GlnPhe: 0.0 ± 0.0
0.0GlnGly: 0.0 ± 0.0
0.0GlnHis: 0.0 ± 0.0
3.236GlnIle: 3.236 ± 2.463
1.618GlnLys: 1.618 ± 1.232
1.618GlnLeu: 1.618 ± 1.212
1.618GlnMet: 1.618 ± 1.232
0.0GlnAsn: 0.0 ± 0.0
0.0GlnPro: 0.0 ± 0.0
0.0GlnGln: 0.0 ± 0.0
0.0GlnArg: 0.0 ± 0.0
4.854GlnSer: 4.854 ± 3.636
1.618GlnThr: 1.618 ± 1.212
0.0GlnVal: 0.0 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.618GlnTyr: 1.618 ± 1.212
0.0GlnXaa: 0.0 ± 0.0
Arg
4.854ArgAla: 4.854 ± 1.192
0.0ArgCys: 0.0 ± 0.0
4.854ArgAsp: 4.854 ± 3.695
1.618ArgGlu: 1.618 ± 1.212
3.236ArgPhe: 3.236 ± 2.463
9.709ArgGly: 9.709 ± 2.384
1.618ArgHis: 1.618 ± 1.232
6.472ArgIle: 6.472 ± 4.847
6.472ArgLys: 6.472 ± 2.404
3.236ArgLeu: 3.236 ± 0.02
1.618ArgMet: 1.618 ± 1.232
1.618ArgAsn: 1.618 ± 1.212
3.236ArgPro: 3.236 ± 2.463
0.0ArgGln: 0.0 ± 0.0
6.472ArgArg: 6.472 ± 2.404
8.091ArgSer: 8.091 ± 1.172
4.854ArgThr: 4.854 ± 1.192
1.618ArgVal: 1.618 ± 1.212
0.0ArgTrp: 0.0 ± 0.0
3.236ArgTyr: 3.236 ± 0.02
0.0ArgXaa: 0.0 ± 0.0
Ser
9.709SerAla: 9.709 ± 2.384
0.0SerCys: 0.0 ± 0.0
8.091SerAsp: 8.091 ± 6.059
1.618SerGlu: 1.618 ± 1.212
3.236SerPhe: 3.236 ± 0.02
6.472SerGly: 6.472 ± 0.04
3.236SerHis: 3.236 ± 2.463
1.618SerIle: 1.618 ± 1.212
4.854SerLys: 4.854 ± 1.192
6.472SerLeu: 6.472 ± 0.04
0.0SerMet: 0.0 ± 0.0
1.618SerAsn: 1.618 ± 1.212
6.472SerPro: 6.472 ± 0.04
4.854SerGln: 4.854 ± 1.192
8.091SerArg: 8.091 ± 1.271
4.854SerSer: 4.854 ± 3.636
4.854SerThr: 4.854 ± 3.636
3.236SerVal: 3.236 ± 2.424
0.0SerTrp: 0.0 ± 0.0
1.618SerTyr: 1.618 ± 1.212
0.0SerXaa: 0.0 ± 0.0
Thr
8.091ThrAla: 8.091 ± 6.059
1.618ThrCys: 1.618 ± 1.212
4.854ThrAsp: 4.854 ± 3.695
3.236ThrGlu: 3.236 ± 0.02
1.618ThrPhe: 1.618 ± 1.232
1.618ThrGly: 1.618 ± 1.212
0.0ThrHis: 0.0 ± 0.0
4.854ThrIle: 4.854 ± 3.636
1.618ThrLys: 1.618 ± 1.212
3.236ThrLeu: 3.236 ± 2.424
1.618ThrMet: 1.618 ± 1.212
1.618ThrAsn: 1.618 ± 1.212
4.854ThrPro: 4.854 ± 1.192
0.0ThrGln: 0.0 ± 0.0
1.618ThrArg: 1.618 ± 1.232
9.709ThrSer: 9.709 ± 7.271
6.472ThrThr: 6.472 ± 4.847
4.854ThrVal: 4.854 ± 1.192
1.618ThrTrp: 1.618 ± 1.232
1.618ThrTyr: 1.618 ± 1.232
0.0ThrXaa: 0.0 ± 0.0
Val
3.236ValAla: 3.236 ± 0.02
3.236ValCys: 3.236 ± 2.463
4.854ValAsp: 4.854 ± 1.192
4.854ValGlu: 4.854 ± 3.695
8.091ValPhe: 8.091 ± 1.271
4.854ValGly: 4.854 ± 1.251
0.0ValHis: 0.0 ± 0.0
1.618ValIle: 1.618 ± 1.212
3.236ValLys: 3.236 ± 0.02
1.618ValLeu: 1.618 ± 1.212
1.618ValMet: 1.618 ± 1.212
3.236ValAsn: 3.236 ± 0.02
3.236ValPro: 3.236 ± 2.424
0.0ValGln: 0.0 ± 0.0
1.618ValArg: 1.618 ± 1.212
3.236ValSer: 3.236 ± 2.424
4.854ValThr: 4.854 ± 1.251
1.618ValVal: 1.618 ± 1.232
1.618ValTrp: 1.618 ± 1.232
1.618ValTyr: 1.618 ± 1.212
0.0ValXaa: 0.0 ± 0.0
Trp
1.618TrpAla: 1.618 ± 1.232
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
1.618TrpPhe: 1.618 ± 1.212
3.236TrpGly: 3.236 ± 2.463
3.236TrpHis: 3.236 ± 0.02
1.618TrpIle: 1.618 ± 1.232
0.0TrpLys: 0.0 ± 0.0
4.854TrpLeu: 4.854 ± 1.251
0.0TrpMet: 0.0 ± 0.0
1.618TrpAsn: 1.618 ± 1.212
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
3.236TrpArg: 3.236 ± 0.02
0.0TrpSer: 0.0 ± 0.0
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.618TrpTyr: 1.618 ± 1.212
0.0TrpXaa: 0.0 ± 0.0
Tyr
9.709TyrAla: 9.709 ± 2.503
0.0TyrCys: 0.0 ± 0.0
3.236TyrAsp: 3.236 ± 0.02
0.0TyrGlu: 0.0 ± 0.0
3.236TyrPhe: 3.236 ± 2.463
3.236TyrGly: 3.236 ± 0.02
0.0TyrHis: 0.0 ± 0.0
0.0TyrIle: 0.0 ± 0.0
0.0TyrLys: 0.0 ± 0.0
0.0TyrLeu: 0.0 ± 0.0
0.0TyrMet: 0.0 ± 0.0
1.618TyrAsn: 1.618 ± 1.232
1.618TyrPro: 1.618 ± 1.212
0.0TyrGln: 0.0 ± 0.0
6.472TyrArg: 6.472 ± 2.404
4.854TyrSer: 4.854 ± 1.192
0.0TyrThr: 0.0 ± 0.0
4.854TyrVal: 4.854 ± 3.636
1.618TyrTrp: 1.618 ± 1.212
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (619 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski