Lactococcus phage CHPC967

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus; Lactococcus virus CHPC967

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 41 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A650EV82|A0A650EV82_9CAUD Tail assembly protein OS=Lactococcus phage CHPC967 OX=2675259 GN=CHPC967_001133 PE=4 SV=1
MM1 pKa = 7.66AEE3 pKa = 3.91KK4 pKa = 10.59NIYY7 pKa = 9.19FVNDD11 pKa = 3.28EE12 pKa = 4.44VEE14 pKa = 4.24LKK16 pKa = 10.42QVLEE20 pKa = 5.24FIDD23 pKa = 3.55KK24 pKa = 9.88TDD26 pKa = 3.36YY27 pKa = 10.95GVNVDD32 pKa = 3.7KK33 pKa = 10.84TSKK36 pKa = 10.48DD37 pKa = 3.19VYY39 pKa = 11.16AVVTSYY45 pKa = 11.55SLPII49 pKa = 4.27

Molecular weight: 5.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A650EU40|A0A650EU40_9CAUD Uncharacterized protein OS=Lactococcus phage CHPC967 OX=2675259 GN=CHPC967_001128 PE=4 SV=1
MM1 pKa = 7.52ATTKK5 pKa = 10.43QVTGLEE11 pKa = 4.36KK12 pKa = 10.09FTEE15 pKa = 4.27EE16 pKa = 3.99QMKK19 pKa = 10.36KK20 pKa = 10.21AWLEE24 pKa = 3.6MVGAFNSNQNTVKK37 pKa = 10.51RR38 pKa = 11.84SYY40 pKa = 10.61KK41 pKa = 10.29SSLGGDD47 pKa = 3.82FSGYY51 pKa = 8.69RR52 pKa = 11.84AKK54 pKa = 10.7FDD56 pKa = 3.46TKK58 pKa = 10.74KK59 pKa = 8.9ITKK62 pKa = 9.39QVTRR66 pKa = 11.84SYY68 pKa = 11.74GSLKK72 pKa = 10.39SGNIGIINGFKK83 pKa = 10.53AKK85 pKa = 10.16EE86 pKa = 4.03EE87 pKa = 3.99SWRR90 pKa = 11.84MLNVLLHH97 pKa = 6.71DD98 pKa = 3.74RR99 pKa = 11.84HH100 pKa = 5.47LHH102 pKa = 4.35QRR104 pKa = 11.84YY105 pKa = 8.52GQTLVKK111 pKa = 9.46ATHH114 pKa = 6.08EE115 pKa = 4.31MDD117 pKa = 5.66DD118 pKa = 3.35KK119 pKa = 11.4TKK121 pKa = 9.88TIKK124 pKa = 10.41RR125 pKa = 11.84KK126 pKa = 9.57LRR128 pKa = 11.84SITNNGG134 pKa = 2.99

Molecular weight: 15.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

41

0

41

6686

30

657

163.1

18.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.743 ± 0.534

0.838 ± 0.178

5.953 ± 0.223

7.344 ± 0.553

4.577 ± 0.248

6.865 ± 0.524

1.376 ± 0.193

6.386 ± 0.291

8.899 ± 0.442

8.121 ± 0.473

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.827 ± 0.239

6.252 ± 0.29

2.602 ± 0.329

3.949 ± 0.298

3.38 ± 0.273

5.938 ± 0.44

6.671 ± 0.424

6.087 ± 0.332

1.526 ± 0.229

4.607 ± 0.443
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski