Amino acid dipepetide frequency for Turkey aviadenovirus 5

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.487AlaAla: 5.487 ± 0.787
1.654AlaCys: 1.654 ± 0.449
3.909AlaAsp: 3.909 ± 0.537
3.834AlaGlu: 3.834 ± 0.8
3.007AlaPhe: 3.007 ± 0.537
4.134AlaGly: 4.134 ± 0.796
1.654AlaHis: 1.654 ± 0.474
4.059AlaIle: 4.059 ± 0.468
2.856AlaLys: 2.856 ± 0.428
7.442AlaLeu: 7.442 ± 0.682
1.428AlaMet: 1.428 ± 0.54
3.458AlaAsn: 3.458 ± 0.398
4.36AlaPro: 4.36 ± 0.659
2.706AlaGln: 2.706 ± 0.651
4.134AlaArg: 4.134 ± 0.528
5.262AlaSer: 5.262 ± 0.638
5.337AlaThr: 5.337 ± 0.66
5.863AlaVal: 5.863 ± 0.617
0.977AlaTrp: 0.977 ± 0.27
2.781AlaTyr: 2.781 ± 0.489
0.0AlaXaa: 0.0 ± 0.0
Cys
0.902CysAla: 0.902 ± 0.252
0.376CysCys: 0.376 ± 0.148
0.827CysAsp: 0.827 ± 0.316
0.827CysGlu: 0.827 ± 0.222
0.902CysPhe: 0.902 ± 0.235
1.278CysGly: 1.278 ± 0.306
1.128CysHis: 1.128 ± 0.294
0.827CysIle: 0.827 ± 0.283
0.827CysLys: 0.827 ± 0.312
1.203CysLeu: 1.203 ± 0.363
0.526CysMet: 0.526 ± 0.174
0.752CysAsn: 0.752 ± 0.311
1.729CysPro: 1.729 ± 0.45
0.601CysGln: 0.601 ± 0.19
0.977CysArg: 0.977 ± 0.423
1.579CysSer: 1.579 ± 0.379
0.902CysThr: 0.902 ± 0.357
1.052CysVal: 1.052 ± 0.292
0.376CysTrp: 0.376 ± 0.156
0.902CysTyr: 0.902 ± 0.291
0.0CysXaa: 0.0 ± 0.0
Asp
4.51AspAla: 4.51 ± 0.69
0.902AspCys: 0.902 ± 0.297
3.308AspAsp: 3.308 ± 0.538
3.458AspGlu: 3.458 ± 0.429
2.255AspPhe: 2.255 ± 0.336
4.134AspGly: 4.134 ± 0.87
0.827AspHis: 0.827 ± 0.242
2.706AspIle: 2.706 ± 0.595
1.503AspLys: 1.503 ± 0.356
5.112AspLeu: 5.112 ± 0.769
0.902AspMet: 0.902 ± 0.303
1.729AspAsn: 1.729 ± 0.42
5.112AspPro: 5.112 ± 0.626
2.105AspGln: 2.105 ± 0.415
3.232AspArg: 3.232 ± 0.477
4.435AspSer: 4.435 ± 0.535
3.683AspThr: 3.683 ± 0.552
3.759AspVal: 3.759 ± 0.531
0.902AspTrp: 0.902 ± 0.234
1.654AspTyr: 1.654 ± 0.319
0.0AspXaa: 0.0 ± 0.0
Glu
3.383GluAla: 3.383 ± 0.486
0.601GluCys: 0.601 ± 0.261
3.533GluAsp: 3.533 ± 0.573
5.863GluGlu: 5.863 ± 1.329
1.353GluPhe: 1.353 ± 0.27
3.232GluGly: 3.232 ± 0.516
1.278GluHis: 1.278 ± 0.315
2.405GluIle: 2.405 ± 0.426
2.255GluLys: 2.255 ± 0.538
5.563GluLeu: 5.563 ± 0.535
1.278GluMet: 1.278 ± 0.334
2.556GluAsn: 2.556 ± 0.58
3.458GluPro: 3.458 ± 0.545
1.729GluGln: 1.729 ± 0.49
4.285GluArg: 4.285 ± 0.901
3.157GluSer: 3.157 ± 0.496
3.984GluThr: 3.984 ± 0.54
3.308GluVal: 3.308 ± 0.463
0.752GluTrp: 0.752 ± 0.263
1.654GluTyr: 1.654 ± 0.427
0.0GluXaa: 0.0 ± 0.0
Phe
3.383PheAla: 3.383 ± 0.401
0.526PheCys: 0.526 ± 0.221
3.608PheAsp: 3.608 ± 0.718
2.33PheGlu: 2.33 ± 0.353
1.654PhePhe: 1.654 ± 0.345
1.353PheGly: 1.353 ± 0.316
0.977PheHis: 0.977 ± 0.337
1.879PheIle: 1.879 ± 0.41
1.879PheLys: 1.879 ± 0.355
4.661PheLeu: 4.661 ± 0.814
0.977PheMet: 0.977 ± 0.292
1.729PheAsn: 1.729 ± 0.355
2.03PhePro: 2.03 ± 0.452
0.526PheGln: 0.526 ± 0.153
3.157PheArg: 3.157 ± 0.466
2.932PheSer: 2.932 ± 0.469
2.255PheThr: 2.255 ± 0.346
3.232PheVal: 3.232 ± 0.458
0.526PheTrp: 0.526 ± 0.208
1.804PheTyr: 1.804 ± 0.35
0.0PheXaa: 0.0 ± 0.0
Gly
5.939GlyAla: 5.939 ± 0.76
0.677GlyCys: 0.677 ± 0.224
2.556GlyAsp: 2.556 ± 0.415
3.232GlyGlu: 3.232 ± 0.495
2.255GlyPhe: 2.255 ± 0.405
5.638GlyGly: 5.638 ± 1.308
1.203GlyHis: 1.203 ± 0.279
3.082GlyIle: 3.082 ± 0.761
1.729GlyLys: 1.729 ± 0.341
5.638GlyLeu: 5.638 ± 1.188
1.503GlyMet: 1.503 ± 0.265
2.856GlyAsn: 2.856 ± 0.586
3.383GlyPro: 3.383 ± 0.598
2.33GlyGln: 2.33 ± 0.31
4.21GlyArg: 4.21 ± 0.662
4.811GlySer: 4.811 ± 0.94
4.886GlyThr: 4.886 ± 0.678
4.661GlyVal: 4.661 ± 0.803
1.052GlyTrp: 1.052 ± 0.213
2.105GlyTyr: 2.105 ± 0.348
0.0GlyXaa: 0.0 ± 0.0
His
1.503HisAla: 1.503 ± 0.343
0.977HisCys: 0.977 ± 0.319
0.827HisAsp: 0.827 ± 0.242
0.977HisGlu: 0.977 ± 0.276
0.526HisPhe: 0.526 ± 0.177
1.353HisGly: 1.353 ± 0.445
0.451HisHis: 0.451 ± 0.201
1.353HisIle: 1.353 ± 0.286
0.226HisLys: 0.226 ± 0.106
1.729HisLeu: 1.729 ± 0.321
0.601HisMet: 0.601 ± 0.215
1.428HisAsn: 1.428 ± 0.299
2.18HisPro: 2.18 ± 0.398
0.451HisGln: 0.451 ± 0.201
2.105HisArg: 2.105 ± 0.403
1.804HisSer: 1.804 ± 0.317
1.052HisThr: 1.052 ± 0.231
1.353HisVal: 1.353 ± 0.357
0.376HisTrp: 0.376 ± 0.183
0.827HisTyr: 0.827 ± 0.289
0.0HisXaa: 0.0 ± 0.0
Ile
3.683IleAla: 3.683 ± 0.493
0.601IleCys: 0.601 ± 0.302
1.879IleAsp: 1.879 ± 0.404
2.18IleGlu: 2.18 ± 0.445
1.353IlePhe: 1.353 ± 0.313
2.405IleGly: 2.405 ± 0.388
1.278IleHis: 1.278 ± 0.346
1.804IleIle: 1.804 ± 0.545
1.654IleLys: 1.654 ± 0.351
3.533IleLeu: 3.533 ± 0.51
0.752IleMet: 0.752 ± 0.232
2.105IleAsn: 2.105 ± 0.464
3.082IlePro: 3.082 ± 0.436
1.503IleGln: 1.503 ± 0.33
2.556IleArg: 2.556 ± 0.364
3.608IleSer: 3.608 ± 0.499
3.232IleThr: 3.232 ± 0.513
3.608IleVal: 3.608 ± 0.436
0.752IleTrp: 0.752 ± 0.22
1.503IleTyr: 1.503 ± 0.301
0.0IleXaa: 0.0 ± 0.0
Lys
2.856LysAla: 2.856 ± 0.587
0.526LysCys: 0.526 ± 0.222
2.405LysAsp: 2.405 ± 0.41
1.503LysGlu: 1.503 ± 0.312
1.879LysPhe: 1.879 ± 0.535
2.18LysGly: 2.18 ± 0.383
0.902LysHis: 0.902 ± 0.294
1.353LysIle: 1.353 ± 0.273
2.03LysLys: 2.03 ± 0.4
3.759LysLeu: 3.759 ± 0.564
1.654LysMet: 1.654 ± 0.388
2.105LysAsn: 2.105 ± 0.505
1.278LysPro: 1.278 ± 0.358
1.203LysGln: 1.203 ± 0.333
3.308LysArg: 3.308 ± 0.765
2.405LysSer: 2.405 ± 0.488
2.706LysThr: 2.706 ± 0.426
1.428LysVal: 1.428 ± 0.29
0.451LysTrp: 0.451 ± 0.146
1.579LysTyr: 1.579 ± 0.3
0.0LysXaa: 0.0 ± 0.0
Leu
6.089LeuAla: 6.089 ± 0.603
2.03LeuCys: 2.03 ± 0.386
4.059LeuAsp: 4.059 ± 0.469
4.285LeuGlu: 4.285 ± 0.595
4.134LeuPhe: 4.134 ± 0.612
5.262LeuGly: 5.262 ± 0.885
1.879LeuHis: 1.879 ± 0.456
3.458LeuIle: 3.458 ± 0.609
4.811LeuLys: 4.811 ± 0.733
8.87LeuLeu: 8.87 ± 1.059
2.706LeuMet: 2.706 ± 0.523
3.834LeuAsn: 3.834 ± 0.566
4.285LeuPro: 4.285 ± 0.63
4.886LeuGln: 4.886 ± 0.654
7.367LeuArg: 7.367 ± 0.771
7.367LeuSer: 7.367 ± 0.691
7.667LeuThr: 7.667 ± 0.808
4.285LeuVal: 4.285 ± 0.42
1.428LeuTrp: 1.428 ± 0.361
4.435LeuTyr: 4.435 ± 0.605
0.0LeuXaa: 0.0 ± 0.0
Met
2.481MetAla: 2.481 ± 0.382
0.526MetCys: 0.526 ± 0.245
1.503MetAsp: 1.503 ± 0.383
0.902MetGlu: 0.902 ± 0.263
0.601MetPhe: 0.601 ± 0.196
1.353MetGly: 1.353 ± 0.359
0.827MetHis: 0.827 ± 0.246
0.827MetIle: 0.827 ± 0.258
0.977MetLys: 0.977 ± 0.272
1.879MetLeu: 1.879 ± 0.362
0.752MetMet: 0.752 ± 0.21
0.827MetAsn: 0.827 ± 0.23
1.278MetPro: 1.278 ± 0.322
0.526MetGln: 0.526 ± 0.177
2.03MetArg: 2.03 ± 0.486
2.03MetSer: 2.03 ± 0.475
1.052MetThr: 1.052 ± 0.31
1.353MetVal: 1.353 ± 0.261
0.301MetTrp: 0.301 ± 0.116
0.977MetTyr: 0.977 ± 0.298
0.0MetXaa: 0.0 ± 0.0
Asn
2.631AsnAla: 2.631 ± 0.427
0.677AsnCys: 0.677 ± 0.247
1.954AsnAsp: 1.954 ± 0.343
2.105AsnGlu: 2.105 ± 0.504
1.428AsnPhe: 1.428 ± 0.494
3.458AsnGly: 3.458 ± 0.857
0.601AsnHis: 0.601 ± 0.199
1.954AsnIle: 1.954 ± 0.615
1.654AsnLys: 1.654 ± 0.379
3.533AsnLeu: 3.533 ± 0.642
0.677AsnMet: 0.677 ± 0.248
1.654AsnAsn: 1.654 ± 0.481
4.51AsnPro: 4.51 ± 0.515
1.203AsnGln: 1.203 ± 0.484
3.007AsnArg: 3.007 ± 0.585
2.33AsnSer: 2.33 ± 0.594
2.781AsnThr: 2.781 ± 0.585
3.759AsnVal: 3.759 ± 0.58
0.902AsnTrp: 0.902 ± 0.288
1.804AsnTyr: 1.804 ± 0.403
0.0AsnXaa: 0.0 ± 0.0
Pro
5.187ProAla: 5.187 ± 0.659
1.203ProCys: 1.203 ± 0.413
3.909ProAsp: 3.909 ± 0.517
3.608ProGlu: 3.608 ± 0.652
3.157ProPhe: 3.157 ± 0.527
3.007ProGly: 3.007 ± 0.544
1.804ProHis: 1.804 ± 0.416
2.481ProIle: 2.481 ± 0.533
2.105ProLys: 2.105 ± 0.428
5.036ProLeu: 5.036 ± 0.744
1.503ProMet: 1.503 ± 0.385
2.481ProAsn: 2.481 ± 0.395
5.337ProPro: 5.337 ± 1.128
2.33ProGln: 2.33 ± 0.42
3.308ProArg: 3.308 ± 0.647
5.863ProSer: 5.863 ± 0.7
3.308ProThr: 3.308 ± 0.546
4.134ProVal: 4.134 ± 0.617
0.526ProTrp: 0.526 ± 0.239
2.255ProTyr: 2.255 ± 0.368
0.0ProXaa: 0.0 ± 0.0
Gln
2.255GlnAla: 2.255 ± 0.546
0.752GlnCys: 0.752 ± 0.289
2.631GlnAsp: 2.631 ± 0.496
1.729GlnGlu: 1.729 ± 0.417
1.654GlnPhe: 1.654 ± 0.319
1.579GlnGly: 1.579 ± 0.378
0.977GlnHis: 0.977 ± 0.269
1.428GlnIle: 1.428 ± 0.326
1.654GlnLys: 1.654 ± 0.284
4.21GlnLeu: 4.21 ± 0.527
0.827GlnMet: 0.827 ± 0.351
1.579GlnAsn: 1.579 ± 0.406
1.729GlnPro: 1.729 ± 0.296
1.804GlnGln: 1.804 ± 0.421
2.405GlnArg: 2.405 ± 0.577
2.556GlnSer: 2.556 ± 0.486
2.631GlnThr: 2.631 ± 0.474
1.729GlnVal: 1.729 ± 0.311
0.526GlnTrp: 0.526 ± 0.169
1.278GlnTyr: 1.278 ± 0.349
0.0GlnXaa: 0.0 ± 0.0
Arg
4.811ArgAla: 4.811 ± 0.732
0.977ArgCys: 0.977 ± 0.344
3.458ArgAsp: 3.458 ± 0.646
3.834ArgGlu: 3.834 ± 0.877
3.157ArgPhe: 3.157 ± 0.526
4.811ArgGly: 4.811 ± 0.791
1.879ArgHis: 1.879 ± 0.397
2.932ArgIle: 2.932 ± 0.51
3.232ArgLys: 3.232 ± 0.558
6.615ArgLeu: 6.615 ± 0.8
1.954ArgMet: 1.954 ± 0.398
2.781ArgAsn: 2.781 ± 0.62
3.533ArgPro: 3.533 ± 0.635
2.631ArgGln: 2.631 ± 0.394
7.517ArgArg: 7.517 ± 1.547
4.811ArgSer: 4.811 ± 0.69
4.059ArgThr: 4.059 ± 0.544
4.134ArgVal: 4.134 ± 0.606
1.353ArgTrp: 1.353 ± 0.366
2.706ArgTyr: 2.706 ± 0.447
0.0ArgXaa: 0.0 ± 0.0
Ser
5.638SerAla: 5.638 ± 0.927
1.503SerCys: 1.503 ± 0.445
4.811SerAsp: 4.811 ± 0.626
4.51SerGlu: 4.51 ± 0.632
3.383SerPhe: 3.383 ± 0.424
6.314SerGly: 6.314 ± 0.838
0.977SerHis: 0.977 ± 0.202
3.082SerIle: 3.082 ± 0.51
2.481SerLys: 2.481 ± 0.686
6.991SerLeu: 6.991 ± 0.906
1.503SerMet: 1.503 ± 0.406
2.856SerAsn: 2.856 ± 0.68
3.608SerPro: 3.608 ± 0.62
2.405SerGln: 2.405 ± 0.409
5.713SerArg: 5.713 ± 0.725
6.39SerSer: 6.39 ± 0.759
4.285SerThr: 4.285 ± 0.649
4.435SerVal: 4.435 ± 0.38
0.601SerTrp: 0.601 ± 0.198
2.781SerTyr: 2.781 ± 0.58
0.0SerXaa: 0.0 ± 0.0
Thr
5.412ThrAla: 5.412 ± 0.582
1.128ThrCys: 1.128 ± 0.34
3.383ThrAsp: 3.383 ± 0.648
4.435ThrGlu: 4.435 ± 0.611
2.631ThrPhe: 2.631 ± 0.398
5.187ThrGly: 5.187 ± 0.759
0.902ThrHis: 0.902 ± 0.3
2.706ThrIle: 2.706 ± 0.515
1.052ThrLys: 1.052 ± 0.209
6.765ThrLeu: 6.765 ± 1.491
0.752ThrMet: 0.752 ± 0.245
2.932ThrAsn: 2.932 ± 0.565
4.21ThrPro: 4.21 ± 0.782
2.03ThrGln: 2.03 ± 0.368
3.608ThrArg: 3.608 ± 0.494
4.36ThrSer: 4.36 ± 0.483
4.51ThrThr: 4.51 ± 0.875
5.713ThrVal: 5.713 ± 0.593
0.827ThrTrp: 0.827 ± 0.261
3.082ThrTyr: 3.082 ± 0.548
0.0ThrXaa: 0.0 ± 0.0
Val
4.51ValAla: 4.51 ± 0.689
1.278ValCys: 1.278 ± 0.279
3.984ValAsp: 3.984 ± 0.698
3.308ValGlu: 3.308 ± 0.523
3.157ValPhe: 3.157 ± 0.438
3.608ValGly: 3.608 ± 0.521
1.203ValHis: 1.203 ± 0.248
2.781ValIle: 2.781 ± 0.477
2.556ValLys: 2.556 ± 0.505
5.939ValLeu: 5.939 ± 0.712
1.353ValMet: 1.353 ± 0.328
2.856ValAsn: 2.856 ± 0.695
4.736ValPro: 4.736 ± 0.576
2.781ValGln: 2.781 ± 0.548
4.36ValArg: 4.36 ± 0.668
5.112ValSer: 5.112 ± 0.838
4.435ValThr: 4.435 ± 0.611
4.961ValVal: 4.961 ± 0.618
0.977ValTrp: 0.977 ± 0.283
2.33ValTyr: 2.33 ± 0.414
0.0ValXaa: 0.0 ± 0.0
Trp
0.827TrpAla: 0.827 ± 0.253
0.526TrpCys: 0.526 ± 0.226
0.677TrpAsp: 0.677 ± 0.253
0.827TrpGlu: 0.827 ± 0.192
0.752TrpPhe: 0.752 ± 0.285
0.752TrpGly: 0.752 ± 0.236
0.226TrpHis: 0.226 ± 0.106
0.827TrpIle: 0.827 ± 0.247
0.451TrpLys: 0.451 ± 0.286
1.052TrpLeu: 1.052 ± 0.279
0.226TrpMet: 0.226 ± 0.156
0.526TrpAsn: 0.526 ± 0.196
0.526TrpPro: 0.526 ± 0.396
0.977TrpGln: 0.977 ± 0.24
1.278TrpArg: 1.278 ± 0.281
1.203TrpSer: 1.203 ± 0.305
0.977TrpThr: 0.977 ± 0.246
1.052TrpVal: 1.052 ± 0.323
0.301TrpTrp: 0.301 ± 0.151
0.677TrpTyr: 0.677 ± 0.206
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.856TyrAla: 2.856 ± 0.435
1.052TyrCys: 1.052 ± 0.293
3.007TyrAsp: 3.007 ± 0.537
1.879TyrGlu: 1.879 ± 0.416
2.18TyrPhe: 2.18 ± 0.494
2.706TyrGly: 2.706 ± 0.438
1.128TyrHis: 1.128 ± 0.325
1.128TyrIle: 1.128 ± 0.309
1.579TyrLys: 1.579 ± 0.376
3.608TyrLeu: 3.608 ± 0.647
1.052TyrMet: 1.052 ± 0.368
1.579TyrAsn: 1.579 ± 0.393
2.18TyrPro: 2.18 ± 0.405
1.203TyrGln: 1.203 ± 0.341
2.631TyrArg: 2.631 ± 0.574
2.255TyrSer: 2.255 ± 0.431
1.879TyrThr: 1.879 ± 0.388
2.405TyrVal: 2.405 ± 0.449
0.827TyrTrp: 0.827 ± 0.271
1.128TyrTyr: 1.128 ± 0.286
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 37 proteins (13304 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski