Vitiosangium sp. GDMCC 1.1324

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Archangiaceae; Vitiosangium; unclassified Vitiosangium

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11115 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T4VU12|A0A2T4VU12_9DELT DUF1109 domain-containing protein OS=Vitiosangium sp. GDMCC 1.1324 OX=2138576 GN=DAT35_00735 PE=4 SV=1
MM1 pKa = 7.05TVCNQGDD8 pKa = 4.09VPGSTIVEE16 pKa = 4.27LVLSSDD22 pKa = 3.64TSILSGWTLPGDD34 pKa = 3.66VHH36 pKa = 8.04LDD38 pKa = 3.44SASTGTLLPQEE49 pKa = 4.71CQTIPFSLWAPSALAWGGWYY69 pKa = 10.46LGGLADD75 pKa = 5.01PSGQQLEE82 pKa = 4.41LLEE85 pKa = 4.79SNNGLAGDD93 pKa = 4.35LVSVGRR99 pKa = 11.84LADD102 pKa = 3.69LVVQSVSGPASTRR115 pKa = 11.84QDD117 pKa = 3.36APLEE121 pKa = 4.15ASVTVCNQGYY131 pKa = 9.85LSSSPTRR138 pKa = 11.84VEE140 pKa = 4.79LYY142 pKa = 10.44LSQDD146 pKa = 3.22EE147 pKa = 4.82VIIPSGPSPGSDD159 pKa = 2.71VFLGRR164 pKa = 11.84VDD166 pKa = 3.72VGYY169 pKa = 10.8LNSDD173 pKa = 3.53EE174 pKa = 4.66CTTLPVSSLFQPVGTWRR191 pKa = 11.84LGAFVNPRR199 pKa = 11.84GSVQEE204 pKa = 4.37STWSNNGRR212 pKa = 11.84AGNTVVVEE220 pKa = 4.19PP221 pKa = 4.68

Molecular weight: 23.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T4VAN7|A0A2T4VAN7_9DELT Uncharacterized protein OS=Vitiosangium sp. GDMCC 1.1324 OX=2138576 GN=DAT35_37960 PE=3 SV=1
MM1 pKa = 7.23SFAWHH6 pKa = 6.57SGRR9 pKa = 11.84PTRR12 pKa = 11.84LATRR16 pKa = 11.84RR17 pKa = 11.84PARR20 pKa = 11.84LLRR23 pKa = 11.84PARR26 pKa = 11.84LLRR29 pKa = 11.84PARR32 pKa = 11.84LLRR35 pKa = 11.84PARR38 pKa = 11.84LLRR41 pKa = 11.84PARR44 pKa = 11.84LARR47 pKa = 11.84LARR50 pKa = 11.84GSSARR55 pKa = 11.84PARR58 pKa = 11.84LSPTRR63 pKa = 11.84GPCCGRR69 pKa = 11.84GRR71 pKa = 11.84RR72 pKa = 11.84FRR74 pKa = 4.57

Molecular weight: 8.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11115

0

11115

4118807

24

4569

370.6

40.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.364 ± 0.035

0.977 ± 0.01

4.89 ± 0.016

6.689 ± 0.023

3.375 ± 0.014

8.602 ± 0.024

2.154 ± 0.012

3.095 ± 0.016

2.989 ± 0.02

11.135 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.944 ± 0.01

2.236 ± 0.014

6.141 ± 0.024

3.473 ± 0.015

7.945 ± 0.028

6.019 ± 0.019

5.415 ± 0.024

7.882 ± 0.019

1.462 ± 0.009

2.213 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski