Amino acid dipepetide frequency for Fusarium graminearum dsRNA mycovirus-1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
9.611AlaAla: 9.611 ± 1.025
1.373AlaCys: 1.373 ± 2.173
4.577AlaAsp: 4.577 ± 2.97
4.577AlaGlu: 4.577 ± 3.283
6.407AlaPhe: 6.407 ± 1.689
6.865AlaGly: 6.865 ± 2.246
0.915AlaHis: 0.915 ± 0.481
4.577AlaIle: 4.577 ± 1.765
8.696AlaLys: 8.696 ± 6.824
10.069AlaLeu: 10.069 ± 1.907
1.373AlaMet: 1.373 ± 0.98
1.373AlaAsn: 1.373 ± 0.416
1.831AlaPro: 1.831 ± 0.975
2.288AlaGln: 2.288 ± 0.808
6.865AlaArg: 6.865 ± 2.485
6.407AlaSer: 6.407 ± 3.307
5.492AlaThr: 5.492 ± 2.26
8.238AlaVal: 8.238 ± 0.983
1.373AlaTrp: 1.373 ± 0.721
1.831AlaTyr: 1.831 ± 0.461
0.0AlaXaa: 0.0 ± 0.0
Cys
1.373CysAla: 1.373 ± 0.416
0.0CysCys: 0.0 ± 0.0
0.458CysAsp: 0.458 ± 0.24
1.373CysGlu: 1.373 ± 1.577
0.0CysPhe: 0.0 ± 0.0
1.831CysGly: 1.831 ± 0.975
0.458CysHis: 0.458 ± 0.24
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
1.373CysLeu: 1.373 ± 1.019
0.0CysMet: 0.0 ± 0.0
0.915CysAsn: 0.915 ± 0.498
0.0CysPro: 0.0 ± 0.0
0.458CysGln: 0.458 ± 0.24
0.0CysArg: 0.0 ± 0.0
1.373CysSer: 1.373 ± 1.355
0.458CysThr: 0.458 ± 0.24
0.458CysVal: 0.458 ± 0.24
0.0CysTrp: 0.0 ± 0.0
0.458CysTyr: 0.458 ± 0.24
0.0CysXaa: 0.0 ± 0.0
Asp
4.119AspAla: 4.119 ± 1.871
0.915AspCys: 0.915 ± 1.097
2.746AspAsp: 2.746 ± 0.685
4.119AspGlu: 4.119 ± 1.194
3.661AspPhe: 3.661 ± 1.394
1.373AspGly: 1.373 ± 1.168
2.288AspHis: 2.288 ± 1.201
1.373AspIle: 1.373 ± 1.019
0.915AspLys: 0.915 ± 0.481
7.323AspLeu: 7.323 ± 1.901
1.373AspMet: 1.373 ± 0.416
1.373AspAsn: 1.373 ± 0.721
2.746AspPro: 2.746 ± 1.495
1.373AspGln: 1.373 ± 0.416
4.577AspArg: 4.577 ± 2.053
5.034AspSer: 5.034 ± 1.295
2.288AspThr: 2.288 ± 2.104
3.204AspVal: 3.204 ± 1.682
1.373AspTrp: 1.373 ± 0.721
1.831AspTyr: 1.831 ± 0.461
0.0AspXaa: 0.0 ± 0.0
Glu
5.95GluAla: 5.95 ± 2.019
0.458GluCys: 0.458 ± 0.24
3.204GluAsp: 3.204 ± 2.109
1.373GluGlu: 1.373 ± 0.416
3.661GluPhe: 3.661 ± 0.922
2.288GluGly: 2.288 ± 1.328
1.831GluHis: 1.831 ± 0.461
0.915GluIle: 0.915 ± 1.326
3.204GluLys: 3.204 ± 1.376
6.407GluLeu: 6.407 ± 1.689
0.458GluMet: 0.458 ± 0.663
2.746GluAsn: 2.746 ± 1.495
3.204GluPro: 3.204 ± 1.618
1.373GluGln: 1.373 ± 0.416
2.746GluArg: 2.746 ± 3.648
2.746GluSer: 2.746 ± 2.932
1.373GluThr: 1.373 ± 1.784
5.034GluVal: 5.034 ± 0.765
1.831GluTrp: 1.831 ± 0.994
1.831GluTyr: 1.831 ± 0.461
0.0GluXaa: 0.0 ± 0.0
Phe
6.865PheAla: 6.865 ± 2.876
0.458PheCys: 0.458 ± 0.663
4.119PheAsp: 4.119 ± 1.464
2.288PheGlu: 2.288 ± 0.886
2.288PhePhe: 2.288 ± 0.606
1.831PheGly: 1.831 ± 0.961
0.0PheHis: 0.0 ± 0.0
3.661PheIle: 3.661 ± 0.67
1.373PheLys: 1.373 ± 0.416
8.696PheLeu: 8.696 ± 1.716
0.0PheMet: 0.0 ± 0.0
3.204PheAsn: 3.204 ± 0.633
1.373PhePro: 1.373 ± 1.355
1.373PheGln: 1.373 ± 0.721
4.577PheArg: 4.577 ± 1.444
3.661PheSer: 3.661 ± 1.291
0.458PheThr: 0.458 ± 0.24
2.746PheVal: 2.746 ± 1.442
2.288PheTrp: 2.288 ± 1.201
0.458PheTyr: 0.458 ± 0.24
0.0PheXaa: 0.0 ± 0.0
Gly
4.119GlyAla: 4.119 ± 0.495
0.915GlyCys: 0.915 ± 0.481
2.746GlyAsp: 2.746 ± 1.111
2.288GlyGlu: 2.288 ± 1.027
0.915GlyPhe: 0.915 ± 0.481
1.373GlyGly: 1.373 ± 0.721
0.458GlyHis: 0.458 ± 0.24
2.746GlyIle: 2.746 ± 1.111
3.661GlyLys: 3.661 ± 0.668
7.323GlyLeu: 7.323 ± 3.844
0.458GlyMet: 0.458 ± 0.24
1.831GlyAsn: 1.831 ± 2.043
4.119GlyPro: 4.119 ± 1.518
1.373GlyGln: 1.373 ± 0.721
3.204GlyArg: 3.204 ± 1.012
2.746GlySer: 2.746 ± 1.093
4.119GlyThr: 4.119 ± 2.162
4.119GlyVal: 4.119 ± 1.572
1.831GlyTrp: 1.831 ± 0.461
3.204GlyTyr: 3.204 ± 0.844
0.0GlyXaa: 0.0 ± 0.0
His
1.373HisAla: 1.373 ± 1.168
0.0HisCys: 0.0 ± 0.0
1.831HisAsp: 1.831 ± 1.32
1.831HisGlu: 1.831 ± 0.997
1.373HisPhe: 1.373 ± 0.721
0.0HisGly: 0.0 ± 0.0
1.373HisHis: 1.373 ± 0.721
0.0HisIle: 0.0 ± 0.0
0.458HisLys: 0.458 ± 0.663
3.204HisLeu: 3.204 ± 1.682
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
1.373HisPro: 1.373 ± 1.019
0.458HisGln: 0.458 ± 0.24
2.746HisArg: 2.746 ± 1.379
2.746HisSer: 2.746 ± 0.799
1.373HisThr: 1.373 ± 1.168
1.373HisVal: 1.373 ± 0.416
0.458HisTrp: 0.458 ± 0.24
1.373HisTyr: 1.373 ± 0.721
0.0HisXaa: 0.0 ± 0.0
Ile
4.577IleAla: 4.577 ± 2.864
1.831IleCys: 1.831 ± 1.32
2.288IleAsp: 2.288 ± 0.606
2.288IleGlu: 2.288 ± 0.606
1.373IlePhe: 1.373 ± 1.355
3.204IleGly: 3.204 ± 1.682
0.0IleHis: 0.0 ± 0.0
2.746IleIle: 2.746 ± 0.799
4.119IleLys: 4.119 ± 1.05
3.204IleLeu: 3.204 ± 1.16
1.373IleMet: 1.373 ± 0.721
1.831IleAsn: 1.831 ± 0.461
2.288IlePro: 2.288 ± 0.606
2.746IleGln: 2.746 ± 1.851
2.746IleArg: 2.746 ± 0.799
1.831IleSer: 1.831 ± 0.994
0.915IleThr: 0.915 ± 0.498
3.661IleVal: 3.661 ± 1.922
0.915IleTrp: 0.915 ± 0.481
0.915IleTyr: 0.915 ± 0.481
0.0IleXaa: 0.0 ± 0.0
Lys
4.577LysAla: 4.577 ± 2.64
0.458LysCys: 0.458 ± 0.663
2.288LysAsp: 2.288 ± 2.167
4.577LysGlu: 4.577 ± 3.005
0.915LysPhe: 0.915 ± 0.481
1.831LysGly: 1.831 ± 0.461
0.915LysHis: 0.915 ± 0.498
1.831LysIle: 1.831 ± 1.424
2.746LysLys: 2.746 ± 0.831
4.577LysLeu: 4.577 ± 1.772
1.373LysMet: 1.373 ± 0.416
0.915LysAsn: 0.915 ± 0.481
2.288LysPro: 2.288 ± 0.886
2.746LysGln: 2.746 ± 1.495
2.746LysArg: 2.746 ± 1.093
5.034LysSer: 5.034 ± 1.295
2.288LysThr: 2.288 ± 1.641
5.034LysVal: 5.034 ± 1.701
0.458LysTrp: 0.458 ± 0.24
2.288LysTyr: 2.288 ± 0.808
0.0LysXaa: 0.0 ± 0.0
Leu
7.78LeuAla: 7.78 ± 1.186
0.915LeuCys: 0.915 ± 0.481
6.407LeuAsp: 6.407 ± 1.777
6.407LeuGlu: 6.407 ± 3.523
4.577LeuPhe: 4.577 ± 0.944
6.865LeuGly: 6.865 ± 1.876
2.288LeuHis: 2.288 ± 1.32
5.492LeuIle: 5.492 ± 1.176
5.95LeuLys: 5.95 ± 3.723
11.442LeuLeu: 11.442 ± 2.597
0.915LeuMet: 0.915 ± 0.481
4.577LeuAsn: 4.577 ± 1.696
7.78LeuPro: 7.78 ± 2.651
4.119LeuGln: 4.119 ± 1.171
5.95LeuArg: 5.95 ± 1.504
11.442LeuSer: 11.442 ± 3.552
8.238LeuThr: 8.238 ± 2.118
7.323LeuVal: 7.323 ± 2.471
1.831LeuTrp: 1.831 ± 0.994
1.831LeuTyr: 1.831 ± 0.997
0.0LeuXaa: 0.0 ± 0.0
Met
2.288MetAla: 2.288 ± 0.606
0.0MetCys: 0.0 ± 0.0
0.915MetAsp: 0.915 ± 1.097
0.458MetGlu: 0.458 ± 0.24
0.458MetPhe: 0.458 ± 0.24
0.458MetGly: 0.458 ± 0.24
0.0MetHis: 0.0 ± 0.0
1.373MetIle: 1.373 ± 0.416
0.458MetLys: 0.458 ± 1.54
1.831MetLeu: 1.831 ± 0.461
0.0MetMet: 0.0 ± 0.0
0.458MetAsn: 0.458 ± 0.663
0.915MetPro: 0.915 ± 0.481
1.373MetGln: 1.373 ± 0.721
0.458MetArg: 0.458 ± 0.24
1.831MetSer: 1.831 ± 0.461
2.288MetThr: 2.288 ± 0.606
1.373MetVal: 1.373 ± 0.416
0.458MetTrp: 0.458 ± 0.24
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.746AsnAla: 2.746 ± 1.495
0.458AsnCys: 0.458 ± 0.663
0.915AsnAsp: 0.915 ± 0.481
0.915AsnGlu: 0.915 ± 0.481
3.204AsnPhe: 3.204 ± 1.012
3.204AsnGly: 3.204 ± 1.012
0.915AsnHis: 0.915 ± 0.498
1.373AsnIle: 1.373 ± 0.721
0.458AsnLys: 0.458 ± 0.24
2.288AsnLeu: 2.288 ± 1.027
0.458AsnMet: 0.458 ± 1.464
0.458AsnAsn: 0.458 ± 0.24
1.373AsnPro: 1.373 ± 1.148
1.831AsnGln: 1.831 ± 1.424
0.458AsnArg: 0.458 ± 0.24
2.746AsnSer: 2.746 ± 1.093
2.288AsnThr: 2.288 ± 1.32
3.204AsnVal: 3.204 ± 1.238
0.458AsnTrp: 0.458 ± 0.24
1.373AsnTyr: 1.373 ± 0.721
0.0AsnXaa: 0.0 ± 0.0
Pro
4.119ProAla: 4.119 ± 0.782
0.458ProCys: 0.458 ± 0.24
2.288ProAsp: 2.288 ± 1.027
3.204ProGlu: 3.204 ± 3.26
4.119ProPhe: 4.119 ± 1.05
1.831ProGly: 1.831 ± 0.461
0.458ProHis: 0.458 ± 0.24
2.746ProIle: 2.746 ± 0.831
1.831ProLys: 1.831 ± 1.424
5.034ProLeu: 5.034 ± 1.573
1.373ProMet: 1.373 ± 0.92
1.373ProAsn: 1.373 ± 0.721
1.831ProPro: 1.831 ± 0.461
1.831ProGln: 1.831 ± 0.997
4.577ProArg: 4.577 ± 3.926
1.831ProSer: 1.831 ± 0.461
3.661ProThr: 3.661 ± 1.588
2.746ProVal: 2.746 ± 1.442
0.0ProTrp: 0.0 ± 0.0
0.915ProTyr: 0.915 ± 0.481
0.0ProXaa: 0.0 ± 0.0
Gln
5.95GlnAla: 5.95 ± 2.019
0.915GlnCys: 0.915 ± 0.498
0.0GlnAsp: 0.0 ± 0.0
1.831GlnGlu: 1.831 ± 0.994
1.373GlnPhe: 1.373 ± 0.721
2.288GlnGly: 2.288 ± 1.201
1.831GlnHis: 1.831 ± 0.994
0.915GlnIle: 0.915 ± 0.481
2.288GlnLys: 2.288 ± 1.641
3.204GlnLeu: 3.204 ± 0.844
1.373GlnMet: 1.373 ± 0.721
0.915GlnAsn: 0.915 ± 0.498
1.373GlnPro: 1.373 ± 1.577
1.831GlnGln: 1.831 ± 3.865
0.915GlnArg: 0.915 ± 1.097
3.661GlnSer: 3.661 ± 1.994
0.915GlnThr: 0.915 ± 1.43
2.288GlnVal: 2.288 ± 1.201
0.458GlnTrp: 0.458 ± 0.24
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
8.238ArgAla: 8.238 ± 5.994
0.458ArgCys: 0.458 ± 0.24
4.119ArgAsp: 4.119 ± 1.247
4.119ArgGlu: 4.119 ± 1.774
0.915ArgPhe: 0.915 ± 0.481
3.204ArgGly: 3.204 ± 1.238
2.288ArgHis: 2.288 ± 1.201
2.746ArgIle: 2.746 ± 1.851
3.661ArgLys: 3.661 ± 1.994
7.78ArgLeu: 7.78 ± 0.973
0.915ArgMet: 0.915 ± 0.498
1.831ArgAsn: 1.831 ± 1.424
1.831ArgPro: 1.831 ± 1.32
2.288ArgGln: 2.288 ± 1.027
5.034ArgArg: 5.034 ± 2.053
4.119ArgSer: 4.119 ± 2.162
5.492ArgThr: 5.492 ± 3.168
3.661ArgVal: 3.661 ± 0.668
1.373ArgTrp: 1.373 ± 0.721
1.831ArgTyr: 1.831 ± 0.961
0.0ArgXaa: 0.0 ± 0.0
Ser
7.78SerAla: 7.78 ± 1.151
0.458SerCys: 0.458 ± 0.24
2.746SerAsp: 2.746 ± 0.799
3.204SerGlu: 3.204 ± 1.618
6.865SerPhe: 6.865 ± 2.639
4.119SerGly: 4.119 ± 1.686
1.831SerHis: 1.831 ± 0.461
3.661SerIle: 3.661 ± 1.235
3.661SerLys: 3.661 ± 0.67
10.069SerLeu: 10.069 ± 2.991
1.831SerMet: 1.831 ± 0.461
1.831SerAsn: 1.831 ± 0.975
3.204SerPro: 3.204 ± 1.426
1.373SerGln: 1.373 ± 0.416
5.95SerArg: 5.95 ± 2.996
7.78SerSer: 7.78 ± 3.626
6.865SerThr: 6.865 ± 1.752
3.204SerVal: 3.204 ± 1.012
2.746SerTrp: 2.746 ± 0.831
2.288SerTyr: 2.288 ± 1.027
0.0SerXaa: 0.0 ± 0.0
Thr
4.577ThrAla: 4.577 ± 1.213
0.458ThrCys: 0.458 ± 0.24
3.204ThrAsp: 3.204 ± 0.844
2.746ThrGlu: 2.746 ± 3.131
1.373ThrPhe: 1.373 ± 0.721
6.407ThrGly: 6.407 ± 1.537
2.288ThrHis: 2.288 ± 2.776
2.746ThrIle: 2.746 ± 1.379
1.831ThrLys: 1.831 ± 0.994
5.034ThrLeu: 5.034 ± 0.765
0.915ThrMet: 0.915 ± 0.683
2.288ThrAsn: 2.288 ± 0.808
3.661ThrPro: 3.661 ± 1.394
0.458ThrGln: 0.458 ± 0.663
4.119ThrArg: 4.119 ± 1.696
5.95ThrSer: 5.95 ± 1.964
4.119ThrThr: 4.119 ± 1.05
1.831ThrVal: 1.831 ± 0.961
1.831ThrTrp: 1.831 ± 0.461
2.746ThrTyr: 2.746 ± 0.831
0.0ThrXaa: 0.0 ± 0.0
Val
4.119ValAla: 4.119 ± 1.05
0.458ValCys: 0.458 ± 0.24
4.577ValAsp: 4.577 ± 1.213
1.831ValGlu: 1.831 ± 0.461
4.577ValPhe: 4.577 ± 1.696
2.746ValGly: 2.746 ± 0.685
1.831ValHis: 1.831 ± 0.975
4.577ValIle: 4.577 ± 2.403
1.831ValLys: 1.831 ± 0.961
6.407ValLeu: 6.407 ± 0.985
1.373ValMet: 1.373 ± 0.721
1.373ValAsn: 1.373 ± 0.416
3.204ValPro: 3.204 ± 1.682
2.746ValGln: 2.746 ± 0.831
4.119ValArg: 4.119 ± 1.247
7.78ValSer: 7.78 ± 3.234
4.119ValThr: 4.119 ± 1.464
4.577ValVal: 4.577 ± 1.696
2.288ValTrp: 2.288 ± 1.201
1.373ValTyr: 1.373 ± 0.721
0.0ValXaa: 0.0 ± 0.0
Trp
1.831TrpAla: 1.831 ± 0.461
0.0TrpCys: 0.0 ± 0.0
1.373TrpAsp: 1.373 ± 0.416
0.915TrpGlu: 0.915 ± 0.481
2.288TrpPhe: 2.288 ± 1.32
0.458TrpGly: 0.458 ± 0.24
0.458TrpHis: 0.458 ± 0.24
0.0TrpIle: 0.0 ± 0.0
1.373TrpLys: 1.373 ± 1.019
3.204TrpLeu: 3.204 ± 1.682
0.915TrpMet: 0.915 ± 0.481
0.915TrpAsn: 0.915 ± 0.481
1.373TrpPro: 1.373 ± 0.721
0.915TrpGln: 0.915 ± 0.481
1.831TrpArg: 1.831 ± 0.961
1.831TrpSer: 1.831 ± 0.961
0.458TrpThr: 0.458 ± 0.24
1.373TrpVal: 1.373 ± 0.721
0.458TrpTrp: 0.458 ± 0.663
1.373TrpTyr: 1.373 ± 0.721
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.746TyrAla: 2.746 ± 0.831
0.0TyrCys: 0.0 ± 0.0
3.204TyrAsp: 3.204 ± 0.844
2.288TyrGlu: 2.288 ± 0.606
1.373TyrPhe: 1.373 ± 0.416
1.373TyrGly: 1.373 ± 0.721
0.915TyrHis: 0.915 ± 0.481
1.373TyrIle: 1.373 ± 0.721
1.373TyrLys: 1.373 ± 0.721
3.661TyrLeu: 3.661 ± 1.394
0.458TyrMet: 0.458 ± 0.24
0.915TyrAsn: 0.915 ± 0.481
0.458TyrPro: 0.458 ± 0.24
1.373TyrGln: 1.373 ± 0.416
2.288TyrArg: 2.288 ± 0.886
0.915TyrSer: 0.915 ± 0.498
1.831TyrThr: 1.831 ± 0.994
0.458TyrVal: 0.458 ± 0.24
0.915TyrTrp: 0.915 ± 0.481
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (2186 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski