Vagococcus coleopterorum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1442 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G8AKU5|A0A6G8AKU5_9ENTE Thioredoxin OS=Vagococcus coleopterorum OX=2714946 GN=trxA PE=3 SV=1
MM1 pKa = 7.16TLAKK5 pKa = 9.5IVYY8 pKa = 10.15ASLTGNTEE16 pKa = 3.78EE17 pKa = 5.22LADD20 pKa = 4.02TVAEE24 pKa = 3.98ALEE27 pKa = 4.25NFDD30 pKa = 4.67IEE32 pKa = 4.74VEE34 pKa = 4.18QEE36 pKa = 3.45EE37 pKa = 4.93CTQVDD42 pKa = 3.59AEE44 pKa = 4.83DD45 pKa = 4.13FADD48 pKa = 4.3ADD50 pKa = 3.6ICIVATYY57 pKa = 9.24TYY59 pKa = 11.29GEE61 pKa = 4.38GDD63 pKa = 4.04LPDD66 pKa = 4.72EE67 pKa = 4.29IVDD70 pKa = 4.34FFEE73 pKa = 5.6DD74 pKa = 3.9LQDD77 pKa = 3.16VDD79 pKa = 5.51LDD81 pKa = 3.86GKK83 pKa = 10.64IYY85 pKa = 10.56GVVGSGDD92 pKa = 3.5TFYY95 pKa = 11.45EE96 pKa = 4.83MYY98 pKa = 9.96CKK100 pKa = 10.54SVDD103 pKa = 3.56DD104 pKa = 4.74FEE106 pKa = 5.9AAFEE110 pKa = 4.11KK111 pKa = 10.33TGAKK115 pKa = 9.93KK116 pKa = 10.39GATCVKK122 pKa = 9.76VDD124 pKa = 4.0LAVEE128 pKa = 4.16EE129 pKa = 4.56EE130 pKa = 4.74DD131 pKa = 3.37IQNVEE136 pKa = 4.1RR137 pKa = 11.84FAKK140 pKa = 10.19EE141 pKa = 3.16IAAHH145 pKa = 6.42FEE147 pKa = 4.02

Molecular weight: 16.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G8ALZ1|A0A6G8ALZ1_9ENTE Nicotinate phosphoribosyltransferase OS=Vagococcus coleopterorum OX=2714946 GN=G7081_02845 PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84KK11 pKa = 8.35HH12 pKa = 6.42AKK14 pKa = 8.54VHH16 pKa = 5.46GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 9.46NGRR28 pKa = 11.84RR29 pKa = 11.84VLASRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.8GRR39 pKa = 11.84KK40 pKa = 8.35VLCSS44 pKa = 3.34

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1442

0

1442

450470

29

1675

312.4

34.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.148 ± 0.071

0.626 ± 0.015

5.616 ± 0.055

7.675 ± 0.076

4.41 ± 0.051

6.733 ± 0.057

1.739 ± 0.027

7.49 ± 0.061

7.083 ± 0.053

9.794 ± 0.078

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.876 ± 0.033

4.609 ± 0.044

3.427 ± 0.034

3.805 ± 0.052

3.585 ± 0.047

6.013 ± 0.046

5.867 ± 0.042

7.268 ± 0.048

0.826 ± 0.021

3.41 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski