Crenobacter sp. GY 70310

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Crenobacter

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3190 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4T0V0K5|A0A4T0V0K5_9NEIS Phosphate transport system permease protein OS=Crenobacter sp. GY 70310 OX=2563443 GN=pstC PE=3 SV=1
MM1 pKa = 7.21TATTEE6 pKa = 4.1MPSPINFTDD15 pKa = 3.72SACDD19 pKa = 3.4KK20 pKa = 10.54VRR22 pKa = 11.84EE23 pKa = 4.12LVAEE27 pKa = 4.28EE28 pKa = 4.56GNPEE32 pKa = 3.75LKK34 pKa = 10.69LRR36 pKa = 11.84VFVTGGGCSGFQYY49 pKa = 10.94GFTFDD54 pKa = 5.2EE55 pKa = 4.78IVNDD59 pKa = 4.08DD60 pKa = 3.41DD61 pKa = 4.23TAIEE65 pKa = 4.07RR66 pKa = 11.84AGVTFLVDD74 pKa = 3.5PMSYY78 pKa = 10.19QYY80 pKa = 11.57LVGAEE85 pKa = 3.99IDD87 pKa = 4.0YY88 pKa = 11.04QDD90 pKa = 4.26SLEE93 pKa = 4.25GSQFVIRR100 pKa = 11.84NPNATTTCGCGSSFSVV116 pKa = 3.54

Molecular weight: 12.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4T0UPB7|A0A4T0UPB7_9NEIS Energy transducer TonB OS=Crenobacter sp. GY 70310 OX=2563443 GN=E5K04_12195 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.31QPSTTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.24RR14 pKa = 11.84THH16 pKa = 5.92GFLVRR21 pKa = 11.84SKK23 pKa = 9.38TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.79GRR39 pKa = 11.84KK40 pKa = 8.68RR41 pKa = 11.84LSVV44 pKa = 3.2

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3190

0

3190

1028072

24

2126

322.3

34.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.401 ± 0.069

1.076 ± 0.015

5.292 ± 0.031

5.576 ± 0.038

3.614 ± 0.029

8.44 ± 0.046

2.137 ± 0.022

4.122 ± 0.035

3.255 ± 0.039

11.507 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.388 ± 0.023

2.502 ± 0.029

4.886 ± 0.033

3.601 ± 0.031

6.899 ± 0.045

5.111 ± 0.033

4.671 ± 0.028

7.672 ± 0.038

1.44 ± 0.018

2.408 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski