Salinivirga cyanobacteriivorans

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Salinivirgaceae; Salinivirga

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3717 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S2HXA5|A0A0S2HXA5_9BACT Dihydroorotate dehydrogenase A (Fumarate) OS=Salinivirga cyanobacteriivorans OX=1307839 GN=pyrDA_1 PE=4 SV=1
MM1 pKa = 7.52LGKK4 pKa = 10.18KK5 pKa = 9.25IKK7 pKa = 10.66YY8 pKa = 9.56LIQILAATFLMLWVTSSCVDD28 pKa = 4.4DD29 pKa = 5.84NFDD32 pKa = 4.07LDD34 pKa = 3.71KK35 pKa = 11.46LSTHH39 pKa = 7.19LEE41 pKa = 4.24NEE43 pKa = 4.58SQWNFPVVSTTFAMEE58 pKa = 5.46DD59 pKa = 3.06ILNLVDD65 pKa = 3.94STGLIYY71 pKa = 10.56TDD73 pKa = 5.3DD74 pKa = 3.85EE75 pKa = 4.76GLVYY79 pKa = 10.61LVYY82 pKa = 10.89SDD84 pKa = 3.7TAYY87 pKa = 9.67TAIAEE92 pKa = 4.24EE93 pKa = 4.83EE94 pKa = 4.38IVFPDD99 pKa = 3.39QNYY102 pKa = 8.24DD103 pKa = 3.77TIFNEE108 pKa = 4.75QDD110 pKa = 3.39YY111 pKa = 11.4QDD113 pKa = 4.34AGGFNNDD120 pKa = 3.04TVKK123 pKa = 10.22MEE125 pKa = 4.29KK126 pKa = 10.55ADD128 pKa = 3.63VNYY131 pKa = 10.62LFVASAEE138 pKa = 4.11NQLLDD143 pKa = 3.74SVKK146 pKa = 10.57VKK148 pKa = 10.92SSLLDD153 pKa = 3.17IDD155 pKa = 4.44VNSSFEE161 pKa = 4.2FEE163 pKa = 4.58GEE165 pKa = 4.02LTLTFPTLRR174 pKa = 11.84KK175 pKa = 9.97NGQLYY180 pKa = 10.29QKK182 pKa = 10.87VIDD185 pKa = 4.17INNASGNFSYY195 pKa = 11.08SEE197 pKa = 4.2TFDD200 pKa = 5.42DD201 pKa = 5.01LDD203 pKa = 5.74GYY205 pKa = 10.61MLDD208 pKa = 3.67FTEE211 pKa = 5.47FAIPDD216 pKa = 3.81SNVFFITYY224 pKa = 8.66EE225 pKa = 3.84LEE227 pKa = 4.33YY228 pKa = 11.16YY229 pKa = 10.54EE230 pKa = 4.47STGSGNVNADD240 pKa = 4.61DD241 pKa = 4.0ICDD244 pKa = 3.41IDD246 pKa = 3.87VTFRR250 pKa = 11.84DD251 pKa = 3.15IEE253 pKa = 4.0YY254 pKa = 9.8DD255 pKa = 4.06YY256 pKa = 11.53VWGYY260 pKa = 10.55IGNQLINIPEE270 pKa = 3.91NNIYY274 pKa = 10.11IDD276 pKa = 3.81LFNEE280 pKa = 4.33FEE282 pKa = 4.13YY283 pKa = 11.61GEE285 pKa = 4.17FQLYY289 pKa = 10.35DD290 pKa = 3.55PRR292 pKa = 11.84LKK294 pKa = 10.7INIFNSFGIPVGVFMNTLQLKK315 pKa = 10.32VDD317 pKa = 4.08GTWEE321 pKa = 4.24DD322 pKa = 3.6VTGSDD327 pKa = 4.87IPTEE331 pKa = 4.1ANPWHH336 pKa = 6.5IPIPEE341 pKa = 4.17SNYY344 pKa = 10.2PEE346 pKa = 4.6IPVADD351 pKa = 4.08TTVMITGQGSNIDD364 pKa = 3.88SLVSRR369 pKa = 11.84LPNNLRR375 pKa = 11.84FAEE378 pKa = 4.27TVEE381 pKa = 4.1INPDD385 pKa = 3.17EE386 pKa = 4.29TGMRR390 pKa = 11.84NNFMAAEE397 pKa = 4.17SRR399 pKa = 11.84VEE401 pKa = 4.12AIVDD405 pKa = 3.76FEE407 pKa = 4.13IPIWGRR413 pKa = 11.84TSGITYY419 pKa = 10.32SDD421 pKa = 4.38TIDD424 pKa = 3.81MDD426 pKa = 4.12LGDD429 pKa = 4.81IGDD432 pKa = 3.9EE433 pKa = 4.05NDD435 pKa = 3.33YY436 pKa = 11.54LDD438 pKa = 4.11YY439 pKa = 11.6LNLKK443 pKa = 8.24LTIGNGFPHH452 pKa = 7.0NIGVKK457 pKa = 10.0GYY459 pKa = 11.14LMDD462 pKa = 3.45STYY465 pKa = 11.11NIVDD469 pKa = 4.82SIPNSNDD476 pKa = 3.08NPNDD480 pKa = 3.31TLIIVEE486 pKa = 4.37SGIIGADD493 pKa = 3.21SLINQEE499 pKa = 3.88TGKK502 pKa = 8.28TVVSSTITYY511 pKa = 9.23EE512 pKa = 4.0NEE514 pKa = 4.05SVDD517 pKa = 3.98VIDD520 pKa = 3.76NVKK523 pKa = 10.86YY524 pKa = 10.11MLLKK528 pKa = 10.51VKK530 pKa = 10.41FMTTDD535 pKa = 3.0GNAPDD540 pKa = 3.51APYY543 pKa = 11.19VKK545 pKa = 10.42FYY547 pKa = 11.25DD548 pKa = 4.3FYY550 pKa = 11.9EE551 pKa = 3.89MDD553 pKa = 3.68FDD555 pKa = 4.94VNVDD559 pKa = 4.23FKK561 pKa = 11.79LDD563 pKa = 3.59VNEE566 pKa = 4.12NLL568 pKa = 4.22

Molecular weight: 64.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S2I2H8|A0A0S2I2H8_9BACT TPR repeat-containing protein YrrB OS=Salinivirga cyanobacteriivorans OX=1307839 GN=yrrB_6 PE=3 SV=1
MM1 pKa = 7.43LNDD4 pKa = 4.15AKK6 pKa = 10.68QPHH9 pKa = 5.9WGKK12 pKa = 10.17RR13 pKa = 11.84RR14 pKa = 11.84CCFANYY20 pKa = 7.66MLPLIEE26 pKa = 4.07MFSRR30 pKa = 11.84HH31 pKa = 5.55EE32 pKa = 3.83RR33 pKa = 11.84HH34 pKa = 5.84NDD36 pKa = 2.61NRR38 pKa = 11.84QRR40 pKa = 11.84TPRR43 pKa = 11.84VPTLRR48 pKa = 11.84TLRR51 pKa = 11.84NLSGRR56 pKa = 11.84CVKK59 pKa = 10.38IIFEE63 pKa = 4.3GVIGRR68 pKa = 11.84RR69 pKa = 11.84YY70 pKa = 10.54NEE72 pKa = 3.6ANYY75 pKa = 10.89

Molecular weight: 9.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3717

0

3717

1369904

29

4899

368.6

41.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.582 ± 0.04

0.681 ± 0.013

5.759 ± 0.039

6.721 ± 0.041

4.971 ± 0.031

6.427 ± 0.05

2.046 ± 0.017

7.754 ± 0.035

7.339 ± 0.072

8.97 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.405 ± 0.02

5.873 ± 0.039

3.53 ± 0.024

3.817 ± 0.027

3.975 ± 0.032

6.069 ± 0.035

5.586 ± 0.051

6.043 ± 0.033

1.095 ± 0.015

4.358 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski