Amino acid dipepetide frequency for Camel associated porprismacovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.736AlaAla: 2.736 ± 1.732
0.0AlaCys: 0.0 ± 0.0
5.472AlaAsp: 5.472 ± 1.98
1.368AlaGlu: 1.368 ± 1.055
2.736AlaPhe: 2.736 ± 1.452
6.84AlaGly: 6.84 ± 1.678
1.368AlaHis: 1.368 ± 0.898
2.736AlaIle: 2.736 ± 1.795
1.368AlaLys: 1.368 ± 1.055
6.84AlaLeu: 6.84 ± 2.358
1.368AlaMet: 1.368 ± 0.898
0.0AlaAsn: 0.0 ± 0.0
1.368AlaPro: 1.368 ± 0.898
1.368AlaGln: 1.368 ± 1.055
0.0AlaArg: 0.0 ± 0.0
10.944AlaSer: 10.944 ± 3.716
4.104AlaThr: 4.104 ± 1.515
6.84AlaVal: 6.84 ± 4.488
1.368AlaTrp: 1.368 ± 1.055
6.84AlaTyr: 6.84 ± 3.212
0.0AlaXaa: 0.0 ± 0.0
Cys
2.736CysAla: 2.736 ± 1.795
0.0CysCys: 0.0 ± 0.0
2.736CysAsp: 2.736 ± 0.662
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.368CysGly: 1.368 ± 1.055
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
1.368CysLys: 1.368 ± 1.055
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
1.368CysArg: 1.368 ± 1.055
2.736CysSer: 2.736 ± 2.11
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
6.84AspAla: 6.84 ± 3.212
1.368AspCys: 1.368 ± 1.055
2.736AspAsp: 2.736 ± 1.795
0.0AspGlu: 0.0 ± 0.0
2.736AspPhe: 2.736 ± 2.11
6.84AspGly: 6.84 ± 2.087
0.0AspHis: 0.0 ± 0.0
1.368AspIle: 1.368 ± 1.055
0.0AspLys: 0.0 ± 0.0
5.472AspLeu: 5.472 ± 2.444
2.736AspMet: 2.736 ± 1.452
1.368AspAsn: 1.368 ± 1.055
5.472AspPro: 5.472 ± 0.823
2.736AspGln: 2.736 ± 1.732
2.736AspArg: 2.736 ± 2.11
2.736AspSer: 2.736 ± 1.795
2.736AspThr: 2.736 ± 1.795
8.208AspVal: 8.208 ± 0.347
1.368AspTrp: 1.368 ± 1.055
4.104AspTyr: 4.104 ± 1.016
0.0AspXaa: 0.0 ± 0.0
Glu
1.368GluAla: 1.368 ± 1.055
0.0GluCys: 0.0 ± 0.0
4.104GluAsp: 4.104 ± 1.515
1.368GluGlu: 1.368 ± 1.055
0.0GluPhe: 0.0 ± 0.0
0.0GluGly: 0.0 ± 0.0
1.368GluHis: 1.368 ± 1.055
4.104GluIle: 4.104 ± 3.165
1.368GluLys: 1.368 ± 0.898
5.472GluLeu: 5.472 ± 1.478
1.368GluMet: 1.368 ± 0.898
1.368GluAsn: 1.368 ± 0.898
4.104GluPro: 4.104 ± 1.515
0.0GluGln: 0.0 ± 0.0
4.104GluArg: 4.104 ± 3.165
2.736GluSer: 2.736 ± 0.662
6.84GluThr: 6.84 ± 2.087
0.0GluVal: 0.0 ± 0.0
1.368GluTrp: 1.368 ± 1.055
2.736GluTyr: 2.736 ± 2.11
0.0GluXaa: 0.0 ± 0.0
Phe
2.736PheAla: 2.736 ± 0.662
0.0PheCys: 0.0 ± 0.0
5.472PheAsp: 5.472 ± 3.239
1.368PheGlu: 1.368 ± 1.055
1.368PhePhe: 1.368 ± 1.055
1.368PheGly: 1.368 ± 1.611
1.368PheHis: 1.368 ± 0.898
2.736PheIle: 2.736 ± 1.452
4.104PheLys: 4.104 ± 2.693
4.104PheLeu: 4.104 ± 2.933
0.0PheMet: 0.0 ± 0.0
2.736PheAsn: 2.736 ± 0.662
1.368PhePro: 1.368 ± 0.898
0.0PheGln: 0.0 ± 0.0
2.736PheArg: 2.736 ± 1.452
0.0PheSer: 0.0 ± 0.0
1.368PheThr: 1.368 ± 1.055
1.368PheVal: 1.368 ± 1.055
1.368PheTrp: 1.368 ± 1.055
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
4.104GlyAla: 4.104 ± 1.798
0.0GlyCys: 0.0 ± 0.0
5.472GlyAsp: 5.472 ± 0.823
2.736GlyGlu: 2.736 ± 2.11
2.736GlyPhe: 2.736 ± 0.662
2.736GlyGly: 2.736 ± 0.662
1.368GlyHis: 1.368 ± 1.055
2.736GlyIle: 2.736 ± 0.662
6.84GlyLys: 6.84 ± 3.563
8.208GlyLeu: 8.208 ± 2.344
4.104GlyMet: 4.104 ± 1.016
1.368GlyAsn: 1.368 ± 1.055
1.368GlyPro: 1.368 ± 1.055
2.736GlyGln: 2.736 ± 1.795
4.104GlyArg: 4.104 ± 1.798
2.736GlySer: 2.736 ± 1.452
8.208GlyThr: 8.208 ± 2.344
2.736GlyVal: 2.736 ± 1.452
0.0GlyTrp: 0.0 ± 0.0
2.736GlyTyr: 2.736 ± 1.732
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
1.368HisAsp: 1.368 ± 1.055
0.0HisGlu: 0.0 ± 0.0
2.736HisPhe: 2.736 ± 0.662
1.368HisGly: 1.368 ± 1.055
0.0HisHis: 0.0 ± 0.0
1.368HisIle: 1.368 ± 0.898
1.368HisLys: 1.368 ± 1.055
1.368HisLeu: 1.368 ± 0.898
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
1.368HisPro: 1.368 ± 0.898
1.368HisGln: 1.368 ± 1.611
1.368HisArg: 1.368 ± 1.055
2.736HisSer: 2.736 ± 0.662
1.368HisThr: 1.368 ± 0.898
1.368HisVal: 1.368 ± 0.898
1.368HisTrp: 1.368 ± 1.055
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.104IleAla: 4.104 ± 1.515
0.0IleCys: 0.0 ± 0.0
4.104IleAsp: 4.104 ± 1.515
1.368IleGlu: 1.368 ± 0.898
0.0IlePhe: 0.0 ± 0.0
2.736IleGly: 2.736 ± 1.452
1.368IleHis: 1.368 ± 1.055
5.472IleIle: 5.472 ± 4.221
4.104IleLys: 4.104 ± 1.515
5.472IleLeu: 5.472 ± 4.727
0.0IleMet: 0.0 ± 0.0
0.0IleAsn: 0.0 ± 0.0
2.736IlePro: 2.736 ± 0.662
2.736IleGln: 2.736 ± 0.662
5.472IleArg: 5.472 ± 2.526
0.0IleSer: 0.0 ± 0.0
2.736IleThr: 2.736 ± 0.662
2.736IleVal: 2.736 ± 1.795
1.368IleTrp: 1.368 ± 1.055
1.368IleTyr: 1.368 ± 0.898
0.0IleXaa: 0.0 ± 0.0
Lys
10.944LysAla: 10.944 ± 3.587
1.368LysCys: 1.368 ± 1.055
2.736LysAsp: 2.736 ± 2.11
2.736LysGlu: 2.736 ± 2.11
1.368LysPhe: 1.368 ± 0.898
6.84LysGly: 6.84 ± 3.563
0.0LysHis: 0.0 ± 0.0
0.0LysIle: 0.0 ± 0.0
2.736LysLys: 2.736 ± 0.662
5.472LysLeu: 5.472 ± 1.478
0.0LysMet: 0.0 ± 0.808
4.104LysAsn: 4.104 ± 1.016
0.0LysPro: 0.0 ± 0.0
1.368LysGln: 1.368 ± 1.055
4.104LysArg: 4.104 ± 1.515
1.368LysSer: 1.368 ± 1.055
2.736LysThr: 2.736 ± 0.662
2.736LysVal: 2.736 ± 1.452
1.368LysTrp: 1.368 ± 0.898
2.736LysTyr: 2.736 ± 3.222
0.0LysXaa: 0.0 ± 0.0
Leu
2.736LeuAla: 2.736 ± 1.452
0.0LeuCys: 0.0 ± 0.0
4.104LeuAsp: 4.104 ± 1.016
1.368LeuGlu: 1.368 ± 0.898
2.736LeuPhe: 2.736 ± 0.662
4.104LeuGly: 4.104 ± 1.172
2.736LeuHis: 2.736 ± 0.662
2.736LeuIle: 2.736 ± 0.662
5.472LeuLys: 5.472 ± 3.239
6.84LeuLeu: 6.84 ± 3.144
2.736LeuMet: 2.736 ± 0.662
4.104LeuAsn: 4.104 ± 1.172
2.736LeuPro: 2.736 ± 1.452
2.736LeuGln: 2.736 ± 0.662
1.368LeuArg: 1.368 ± 0.898
16.416LeuSer: 16.416 ± 5.94
1.368LeuThr: 1.368 ± 0.898
8.208LeuVal: 8.208 ± 1.497
1.368LeuTrp: 1.368 ± 1.055
5.472LeuTyr: 5.472 ± 0.823
0.0LeuXaa: 0.0 ± 0.0
Met
1.368MetAla: 1.368 ± 1.611
0.0MetCys: 0.0 ± 0.0
1.368MetAsp: 1.368 ± 1.611
2.736MetGlu: 2.736 ± 0.662
1.368MetPhe: 1.368 ± 0.898
1.368MetGly: 1.368 ± 0.898
1.368MetHis: 1.368 ± 1.055
2.736MetIle: 2.736 ± 2.11
1.368MetLys: 1.368 ± 1.055
1.368MetLeu: 1.368 ± 0.898
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
4.104MetPro: 4.104 ± 1.798
0.0MetGln: 0.0 ± 0.0
2.736MetArg: 2.736 ± 1.452
4.104MetSer: 4.104 ± 2.693
4.104MetThr: 4.104 ± 1.798
1.368MetVal: 1.368 ± 1.611
0.0MetTrp: 0.0 ± 0.0
1.368MetTyr: 1.368 ± 1.611
0.0MetXaa: 0.0 ± 0.0
Asn
0.0AsnAla: 0.0 ± 0.0
0.0AsnCys: 0.0 ± 0.0
6.84AsnAsp: 6.84 ± 4.339
2.736AsnGlu: 2.736 ± 2.11
4.104AsnPhe: 4.104 ± 2.933
1.368AsnGly: 1.368 ± 0.898
0.0AsnHis: 0.0 ± 0.0
2.736AsnIle: 2.736 ± 2.11
2.736AsnLys: 2.736 ± 0.662
4.104AsnLeu: 4.104 ± 1.515
0.0AsnMet: 0.0 ± 0.0
2.736AsnAsn: 2.736 ± 0.662
1.368AsnPro: 1.368 ± 0.898
0.0AsnGln: 0.0 ± 0.0
1.368AsnArg: 1.368 ± 0.898
1.368AsnSer: 1.368 ± 0.898
2.736AsnThr: 2.736 ± 1.795
1.368AsnVal: 1.368 ± 0.898
0.0AsnTrp: 0.0 ± 0.0
1.368AsnTyr: 1.368 ± 0.898
0.0AsnXaa: 0.0 ± 0.0
Pro
4.104ProAla: 4.104 ± 1.016
0.0ProCys: 0.0 ± 0.0
2.736ProAsp: 2.736 ± 0.662
0.0ProGlu: 0.0 ± 0.0
1.368ProPhe: 1.368 ± 1.611
2.736ProGly: 2.736 ± 1.795
1.368ProHis: 1.368 ± 0.898
2.736ProIle: 2.736 ± 1.452
0.0ProLys: 0.0 ± 0.0
6.84ProLeu: 6.84 ± 1.39
2.736ProMet: 2.736 ± 1.452
0.0ProAsn: 0.0 ± 0.0
1.368ProPro: 1.368 ± 0.898
1.368ProGln: 1.368 ± 0.898
6.84ProArg: 6.84 ± 4.192
8.208ProSer: 8.208 ± 4.035
4.104ProThr: 4.104 ± 2.693
2.736ProVal: 2.736 ± 1.795
0.0ProTrp: 0.0 ± 0.0
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.736GlnAla: 2.736 ± 1.795
1.368GlnCys: 1.368 ± 1.055
1.368GlnAsp: 1.368 ± 0.898
0.0GlnGlu: 0.0 ± 0.0
0.0GlnPhe: 0.0 ± 0.0
0.0GlnGly: 0.0 ± 0.0
0.0GlnHis: 0.0 ± 0.0
4.104GlnIle: 4.104 ± 1.172
1.368GlnLys: 1.368 ± 1.055
1.368GlnLeu: 1.368 ± 1.055
0.0GlnMet: 0.0 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
1.368GlnPro: 1.368 ± 0.898
0.0GlnGln: 0.0 ± 0.0
2.736GlnArg: 2.736 ± 0.662
4.104GlnSer: 4.104 ± 1.016
5.472GlnThr: 5.472 ± 1.478
0.0GlnVal: 0.0 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.368GlnTyr: 1.368 ± 1.611
0.0GlnXaa: 0.0 ± 0.0
Arg
4.104ArgAla: 4.104 ± 1.172
1.368ArgCys: 1.368 ± 1.055
0.0ArgAsp: 0.0 ± 0.0
5.472ArgGlu: 5.472 ± 4.221
2.736ArgPhe: 2.736 ± 1.732
4.104ArgGly: 4.104 ± 1.016
2.736ArgHis: 2.736 ± 1.452
2.736ArgIle: 2.736 ± 0.662
2.736ArgLys: 2.736 ± 2.11
1.368ArgLeu: 1.368 ± 1.055
4.104ArgMet: 4.104 ± 1.808
4.104ArgAsn: 4.104 ± 1.016
5.472ArgPro: 5.472 ± 0.823
2.736ArgGln: 2.736 ± 1.732
2.736ArgArg: 2.736 ± 2.11
1.368ArgSer: 1.368 ± 1.055
2.736ArgThr: 2.736 ± 1.732
2.736ArgVal: 2.736 ± 1.732
1.368ArgTrp: 1.368 ± 1.055
8.208ArgTyr: 8.208 ± 2.033
0.0ArgXaa: 0.0 ± 0.0
Ser
1.368SerAla: 1.368 ± 1.055
2.736SerCys: 2.736 ± 1.795
5.472SerAsp: 5.472 ± 1.98
6.84SerGlu: 6.84 ± 2.087
2.736SerPhe: 2.736 ± 0.662
12.312SerGly: 12.312 ± 3.017
0.0SerHis: 0.0 ± 0.0
4.104SerIle: 4.104 ± 1.798
5.472SerLys: 5.472 ± 2.905
4.104SerLeu: 4.104 ± 2.693
6.84SerMet: 6.84 ± 2.551
4.104SerAsn: 4.104 ± 1.798
1.368SerPro: 1.368 ± 0.898
1.368SerGln: 1.368 ± 0.898
4.104SerArg: 4.104 ± 1.016
5.472SerSer: 5.472 ± 4.727
8.208SerThr: 8.208 ± 2.344
6.84SerVal: 6.84 ± 2.842
2.736SerTrp: 2.736 ± 1.452
1.368SerTyr: 1.368 ± 1.611
0.0SerXaa: 0.0 ± 0.0
Thr
6.84ThrAla: 6.84 ± 2.842
0.0ThrCys: 0.0 ± 0.0
1.368ThrAsp: 1.368 ± 0.898
5.472ThrGlu: 5.472 ± 1.98
1.368ThrPhe: 1.368 ± 0.898
6.84ThrGly: 6.84 ± 1.678
1.368ThrHis: 1.368 ± 1.055
2.736ThrIle: 2.736 ± 2.11
4.104ThrLys: 4.104 ± 2.373
4.104ThrLeu: 4.104 ± 1.172
1.368ThrMet: 1.368 ± 1.055
2.736ThrAsn: 2.736 ± 0.662
2.736ThrPro: 2.736 ± 1.795
1.368ThrGln: 1.368 ± 0.898
2.736ThrArg: 2.736 ± 1.732
4.104ThrSer: 4.104 ± 2.693
12.312ThrThr: 12.312 ± 2.886
8.208ThrVal: 8.208 ± 3.721
2.736ThrTrp: 2.736 ± 1.732
4.104ThrTyr: 4.104 ± 2.693
0.0ThrXaa: 0.0 ± 0.0
Val
4.104ValAla: 4.104 ± 1.798
2.736ValCys: 2.736 ± 0.662
2.736ValAsp: 2.736 ± 1.795
1.368ValGlu: 1.368 ± 0.898
4.104ValPhe: 4.104 ± 2.373
1.368ValGly: 1.368 ± 0.898
2.736ValHis: 2.736 ± 0.662
1.368ValIle: 1.368 ± 1.611
4.104ValLys: 4.104 ± 1.016
4.104ValLeu: 4.104 ± 1.172
1.368ValMet: 1.368 ± 0.898
2.736ValAsn: 2.736 ± 1.795
6.84ValPro: 6.84 ± 1.39
1.368ValGln: 1.368 ± 0.898
4.104ValArg: 4.104 ± 1.172
10.944ValSer: 10.944 ± 2.122
4.104ValThr: 4.104 ± 2.693
9.576ValVal: 9.576 ± 2.266
0.0ValTrp: 0.0 ± 0.0
1.368ValTyr: 1.368 ± 0.898
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
1.368TrpCys: 1.368 ± 1.055
0.0TrpAsp: 0.0 ± 0.0
1.368TrpGlu: 1.368 ± 1.055
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
2.736TrpLys: 2.736 ± 2.11
1.368TrpLeu: 1.368 ± 1.055
1.368TrpMet: 1.368 ± 1.055
2.736TrpAsn: 2.736 ± 1.452
0.0TrpPro: 0.0 ± 0.0
2.736TrpGln: 2.736 ± 2.11
2.736TrpArg: 2.736 ± 1.732
1.368TrpSer: 1.368 ± 0.898
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.736TyrAla: 2.736 ± 1.795
0.0TyrCys: 0.0 ± 0.0
1.368TyrAsp: 1.368 ± 0.898
5.472TyrGlu: 5.472 ± 3.239
1.368TyrPhe: 1.368 ± 0.898
2.736TyrGly: 2.736 ± 1.732
1.368TyrHis: 1.368 ± 0.898
1.368TyrIle: 1.368 ± 1.055
2.736TyrLys: 2.736 ± 1.795
1.368TyrLeu: 1.368 ± 1.611
1.368TyrMet: 1.368 ± 1.611
2.736TyrAsn: 2.736 ± 1.452
4.104TyrPro: 4.104 ± 2.933
1.368TyrGln: 1.368 ± 0.898
5.472TyrArg: 5.472 ± 6.444
4.104TyrSer: 4.104 ± 1.172
1.368TyrThr: 1.368 ± 0.898
4.104TyrVal: 4.104 ± 1.172
0.0TyrTrp: 0.0 ± 0.0
4.104TyrTyr: 4.104 ± 1.798
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (732 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski