Lapillicoccus jejuensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Intrasporangiaceae; Lapillicoccus

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4122 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A542E511|A0A542E511_9MICO Fatty-acyl-CoA synthase OS=Lapillicoccus jejuensis OX=402171 GN=FB458_3484 PE=4 SV=1
MM1 pKa = 7.84SDD3 pKa = 4.16LEE5 pKa = 4.36YY6 pKa = 10.38PDD8 pKa = 3.7TLRR11 pKa = 11.84YY12 pKa = 7.41TADD15 pKa = 3.58HH16 pKa = 6.41EE17 pKa = 4.63WVQEE21 pKa = 4.16RR22 pKa = 11.84EE23 pKa = 4.2DD24 pKa = 3.38GTIRR28 pKa = 11.84IGITAYY34 pKa = 10.49AQDD37 pKa = 3.56ALGDD41 pKa = 3.76VVYY44 pKa = 10.89VQLPAVGDD52 pKa = 3.93TVTVGDD58 pKa = 3.59TCGEE62 pKa = 4.2VEE64 pKa = 4.37STKK67 pKa = 10.76SVSDD71 pKa = 3.33VYY73 pKa = 11.53APVTGEE79 pKa = 3.95VTEE82 pKa = 4.42VNAALDD88 pKa = 3.85GTPEE92 pKa = 4.3LVNSAPYY99 pKa = 9.3TDD101 pKa = 2.66GWMYY105 pKa = 11.04AVRR108 pKa = 11.84PSGEE112 pKa = 4.16LPGDD116 pKa = 3.59LMDD119 pKa = 4.48AATYY123 pKa = 10.42RR124 pKa = 11.84GTLGG128 pKa = 3.35

Molecular weight: 13.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A542DWJ2|A0A542DWJ2_9MICO Fructose-1 6-bisphosphatase OS=Lapillicoccus jejuensis OX=402171 GN=FB458_0477 PE=3 SV=1
MM1 pKa = 7.36GFSFRR6 pKa = 11.84KK7 pKa = 7.79TIRR10 pKa = 11.84VGPLRR15 pKa = 11.84LTASRR20 pKa = 11.84RR21 pKa = 11.84GLGTSVGMGSFRR33 pKa = 11.84VQSSRR38 pKa = 11.84GRR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84ASARR46 pKa = 11.84LPFGLNWRR54 pKa = 11.84GRR56 pKa = 11.84VV57 pKa = 3.28

Molecular weight: 6.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4122

0

4122

1392142

30

2163

337.7

35.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.861 ± 0.058

0.634 ± 0.009

6.383 ± 0.032

4.962 ± 0.04

2.414 ± 0.021

9.754 ± 0.037

2.148 ± 0.019

2.371 ± 0.034

1.526 ± 0.029

10.535 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.512 ± 0.015

1.371 ± 0.018

6.176 ± 0.034

2.747 ± 0.022

8.098 ± 0.052

5.154 ± 0.031

6.606 ± 0.045

10.348 ± 0.044

1.552 ± 0.017

1.846 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski