Haloglomus irregulare

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloglomus

Average proteome isoelectric point is 5.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3668 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A554NE85|A0A554NE85_9EURY Transposase OS=Haloglomus irregulare OX=2234134 GN=DP107_00450 PE=4 SV=1
MM1 pKa = 7.54SAQDD5 pKa = 4.9DD6 pKa = 4.1IEE8 pKa = 4.77LPEE11 pKa = 4.22TLSYY15 pKa = 10.71HH16 pKa = 6.58DD17 pKa = 2.99WAAAVRR23 pKa = 11.84EE24 pKa = 4.23GQLLGQSCNDD34 pKa = 3.53CDD36 pKa = 3.92HH37 pKa = 6.72VGGVPSGACQEE48 pKa = 4.37CGGRR52 pKa = 11.84DD53 pKa = 3.6LTTVEE58 pKa = 4.85LPTTGTVYY66 pKa = 10.73TEE68 pKa = 3.95TTINVPPEE76 pKa = 4.02GFQEE80 pKa = 3.55RR81 pKa = 11.84GYY83 pKa = 10.52QVVVVDD89 pKa = 5.01LGDD92 pKa = 3.56ARR94 pKa = 11.84VMARR98 pKa = 11.84IVGEE102 pKa = 4.13HH103 pKa = 5.93VDD105 pKa = 3.37IGDD108 pKa = 4.06DD109 pKa = 3.49VSLSGFIDD117 pKa = 3.52TDD119 pKa = 3.88DD120 pKa = 4.3DD121 pKa = 4.07HH122 pKa = 7.22PAPTFEE128 pKa = 5.54PDD130 pKa = 3.13DD131 pKa = 3.75

Molecular weight: 14.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A554NAJ8|A0A554NAJ8_9EURY Adenylate kinase OS=Haloglomus irregulare OX=2234134 GN=DP107_10180 PE=4 SV=1
MM1 pKa = 7.03VARR4 pKa = 11.84PEE6 pKa = 4.28AIRR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84GRR16 pKa = 11.84RR17 pKa = 11.84PQPRR21 pKa = 11.84PRR23 pKa = 11.84RR24 pKa = 11.84PPPQRR29 pKa = 11.84RR30 pKa = 11.84RR31 pKa = 11.84PLRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84PPLRR41 pKa = 11.84RR42 pKa = 11.84PTPPPPTGALRR53 pKa = 11.84PGPQGVNGRR62 pKa = 11.84AWTRR66 pKa = 11.84RR67 pKa = 11.84PRR69 pKa = 11.84PTPRR73 pKa = 4.25

Molecular weight: 8.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3668

0

3668

1061482

22

3378

289.4

31.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.79 ± 0.065

0.759 ± 0.014

8.436 ± 0.049

8.114 ± 0.057

3.115 ± 0.025

9.277 ± 0.047

2.015 ± 0.023

3.309 ± 0.032

1.506 ± 0.023

8.874 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.662 ± 0.018

2.108 ± 0.025

5.123 ± 0.034

2.344 ± 0.023

7.33 ± 0.047

5.088 ± 0.04

6.534 ± 0.04

9.031 ± 0.05

1.072 ± 0.016

2.513 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski