Sandaracinobacter sp. PAMC 28131

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingosinicellaceae; Sandaracinobacter; unclassified Sandaracinobacter

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3327 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A501XNG0|A0A501XNG0_9SPHN Cysteine hydrolase OS=Sandaracinobacter sp. PAMC 28131 OX=1715348 GN=FJQ54_06625 PE=4 SV=1
MM1 pKa = 8.06RR2 pKa = 11.84ILTGLLLGCASFVALSSTPASAATCFGNCGEE33 pKa = 4.3TNINGGQTGSVGVPPLQGDD52 pKa = 3.64NVYY55 pKa = 10.95YY56 pKa = 9.94WVSTNGGSTGGGTLPGQEE74 pKa = 4.19SGSTNGSRR82 pKa = 11.84LVSDD86 pKa = 4.07SFYY89 pKa = 11.18AAAGQKK95 pKa = 9.47VSYY98 pKa = 8.57YY99 pKa = 10.46FNYY102 pKa = 8.15ITSDD106 pKa = 3.14GAGYY110 pKa = 11.0ADD112 pKa = 4.27YY113 pKa = 10.89SWSQLRR119 pKa = 11.84DD120 pKa = 3.46VNDD123 pKa = 3.54SSNVTNLFTARR134 pKa = 11.84TKK136 pKa = 10.63PSGTIVPGLDD146 pKa = 3.55LPDD149 pKa = 3.81VEE151 pKa = 5.15ATLSPATVLIKK162 pKa = 10.6PGTTFAPLGDD172 pKa = 3.68SSGACWSAGCGNTGWIYY189 pKa = 11.07SEE191 pKa = 4.12YY192 pKa = 10.04TIQTSGTYY200 pKa = 9.65EE201 pKa = 3.95LVFGVSNWDD210 pKa = 3.16DD211 pKa = 3.56TAFDD215 pKa = 3.54SALAFDD221 pKa = 4.62GLLIGGIVIGDD232 pKa = 3.97GSSPTNPLAPTDD244 pKa = 4.12LQPDD248 pKa = 4.12GSFVFSFEE256 pKa = 4.05VTQPEE261 pKa = 4.2QPVFIDD267 pKa = 3.98PYY269 pKa = 8.7VAVGYY274 pKa = 9.49EE275 pKa = 3.92YY276 pKa = 10.9EE277 pKa = 4.44VIDD280 pKa = 4.19GSLAFSQAWFGDD292 pKa = 3.31VGDD295 pKa = 4.37PDD297 pKa = 5.65GYY299 pKa = 10.75QIWGWDD305 pKa = 3.2GADD308 pKa = 3.49YY309 pKa = 11.47YY310 pKa = 11.43FLTDD314 pKa = 3.32ITAEE318 pKa = 3.65TWYY321 pKa = 10.83AFASPVTKK329 pKa = 10.65FKK331 pKa = 11.24LLGIDD336 pKa = 3.69SDD338 pKa = 4.59LGLDD342 pKa = 3.95PEE344 pKa = 4.98DD345 pKa = 4.14PNAFVSGFIYY355 pKa = 10.73NGTGKK360 pKa = 10.1VDD362 pKa = 3.63VSMKK366 pKa = 10.5PITEE370 pKa = 4.02WVEE373 pKa = 3.92GGGGGVVPEE382 pKa = 4.08PATWAMMILGFGAVGLAARR401 pKa = 11.84RR402 pKa = 11.84RR403 pKa = 11.84RR404 pKa = 11.84SHH406 pKa = 6.59SVTAA410 pKa = 4.29

Molecular weight: 43.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A501XDP2|A0A501XDP2_9SPHN 3'(2') 5'-bisphosphate nucleotidase CysQ OS=Sandaracinobacter sp. PAMC 28131 OX=1715348 GN=cysQ PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.43LVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.39GFRR19 pKa = 11.84ARR21 pKa = 11.84MSTVGGRR28 pKa = 11.84KK29 pKa = 8.56VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84SRR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.76VLSAA44 pKa = 4.11

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3327

0

3327

1063820

37

3595

319.8

34.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.694 ± 0.061

0.674 ± 0.011

5.574 ± 0.029

5.369 ± 0.045

3.505 ± 0.025

9.058 ± 0.083

1.938 ± 0.02

4.729 ± 0.027

2.939 ± 0.033

10.529 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.328 ± 0.022

2.477 ± 0.031

5.698 ± 0.04

3.218 ± 0.026

7.299 ± 0.053

5.335 ± 0.038

5.142 ± 0.039

7.013 ± 0.039

1.484 ± 0.019

1.999 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski