Garlic latent virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus; Shallot latent virus

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8QXY6|Q8QXY6_9VIRU Movement protein TGB2 OS=Garlic latent virus OX=12458 PE=3 SV=1
MM1 pKa = 7.24QLQPLIALLIGLSVTLIICLTFDD24 pKa = 3.88SIRR27 pKa = 11.84TEE29 pKa = 3.74RR30 pKa = 11.84CTVIITGEE38 pKa = 4.16SVKK41 pKa = 10.65FLGCEE46 pKa = 3.91FTRR49 pKa = 11.84DD50 pKa = 4.0FIDD53 pKa = 4.11FAIQAKK59 pKa = 9.97PFGSLL64 pKa = 3.12

Molecular weight: 7.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8QXY4|Q8QXY4_9VIRU Capsid protein OS=Garlic latent virus OX=12458 PE=3 SV=1
MM1 pKa = 7.75LIKK4 pKa = 10.38QRR6 pKa = 11.84TYY8 pKa = 10.94RR9 pKa = 11.84RR10 pKa = 11.84LLRR13 pKa = 11.84AIFKK17 pKa = 10.5LHH19 pKa = 5.46TNKK22 pKa = 10.08NCVDD26 pKa = 5.24LIDD29 pKa = 5.06IIVSKK34 pKa = 10.31IVCDD38 pKa = 3.38NAGASRR44 pKa = 11.84YY45 pKa = 9.69ARR47 pKa = 11.84ARR49 pKa = 11.84RR50 pKa = 11.84AKK52 pKa = 10.6SIGRR56 pKa = 11.84CPRR59 pKa = 11.84CFRR62 pKa = 11.84CSPGFSFTKK71 pKa = 10.42NCDD74 pKa = 3.02SKK76 pKa = 10.0TCVPGISYY84 pKa = 10.02NVKK87 pKa = 9.92VKK89 pKa = 10.86DD90 pKa = 4.37FIVNGVTMM98 pKa = 5.03

Molecular weight: 11.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2729

64

1924

454.8

51.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.449 ± 1.042

3.554 ± 0.674

4.874 ± 0.558

6.669 ± 1.242

6.449 ± 0.671

6.046 ± 0.49

2.492 ± 0.767

4.984 ± 0.887

6.303 ± 0.699

10.553 ± 0.996

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.869 ± 0.331

5.02 ± 0.944

3.884 ± 0.509

2.455 ± 0.269

5.387 ± 0.823

7.292 ± 0.553

5.716 ± 0.786

6.303 ± 0.693

0.696 ± 0.193

3.005 ± 0.372
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski