Amino acid dipepetide frequency for Garlic latent virus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.666AlaAla: 3.666 ± 0.608
0.733AlaCys: 0.733 ± 0.367
2.566AlaAsp: 2.566 ± 0.357
4.765AlaGlu: 4.765 ± 2.229
3.666AlaPhe: 3.666 ± 0.951
3.299AlaGly: 3.299 ± 0.618
1.466AlaHis: 1.466 ± 0.427
4.399AlaIle: 4.399 ± 0.923
6.965AlaLys: 6.965 ± 1.637
6.965AlaLeu: 6.965 ± 1.107
0.367AlaMet: 0.367 ± 0.183
2.933AlaAsn: 2.933 ± 0.784
4.032AlaPro: 4.032 ± 1.588
1.833AlaGln: 1.833 ± 0.475
1.833AlaArg: 1.833 ± 1.01
5.132AlaSer: 5.132 ± 0.664
4.765AlaThr: 4.765 ± 1.487
4.765AlaVal: 4.765 ± 1.515
0.0AlaTrp: 0.0 ± 0.0
0.367AlaTyr: 0.367 ± 0.183
0.0AlaXaa: 0.0 ± 0.0
Cys
1.833CysAla: 1.833 ± 0.459
0.367CysCys: 0.367 ± 0.183
1.833CysAsp: 1.833 ± 1.258
1.466CysGlu: 1.466 ± 0.705
3.666CysPhe: 3.666 ± 1.461
2.933CysGly: 2.933 ± 0.942
1.1CysHis: 1.1 ± 0.55
2.933CysIle: 2.933 ± 0.792
1.833CysLys: 1.833 ± 1.84
3.299CysLeu: 3.299 ± 1.01
0.733CysMet: 0.733 ± 1.134
0.733CysAsn: 0.733 ± 0.638
1.1CysPro: 1.1 ± 0.513
0.733CysGln: 0.733 ± 0.571
1.1CysArg: 1.1 ± 0.893
2.199CysSer: 2.199 ± 0.772
2.566CysThr: 2.566 ± 0.834
3.666CysVal: 3.666 ± 1.04
0.0CysTrp: 0.0 ± 0.0
1.466CysTyr: 1.466 ± 0.669
0.0CysXaa: 0.0 ± 0.0
Asp
4.032AspAla: 4.032 ± 2.491
1.466AspCys: 1.466 ± 0.733
2.933AspAsp: 2.933 ± 1.466
3.666AspGlu: 3.666 ± 1.167
3.299AspPhe: 3.299 ± 1.859
2.566AspGly: 2.566 ± 0.752
1.466AspHis: 1.466 ± 0.934
2.566AspIle: 2.566 ± 0.59
1.466AspLys: 1.466 ± 0.733
4.399AspLeu: 4.399 ± 0.925
1.466AspMet: 1.466 ± 0.392
2.933AspAsn: 2.933 ± 0.895
1.466AspPro: 1.466 ± 0.427
1.1AspGln: 1.1 ± 0.55
2.933AspArg: 2.933 ± 0.942
3.666AspSer: 3.666 ± 1.428
1.466AspThr: 1.466 ± 0.392
3.299AspVal: 3.299 ± 1.626
0.733AspTrp: 0.733 ± 0.571
1.833AspTyr: 1.833 ± 0.459
0.0AspXaa: 0.0 ± 0.0
Glu
3.666GluAla: 3.666 ± 1.263
2.566GluCys: 2.566 ± 0.357
2.933GluAsp: 2.933 ± 0.942
5.499GluGlu: 5.499 ± 1.926
4.032GluPhe: 4.032 ± 1.363
2.566GluGly: 2.566 ± 1.281
1.833GluHis: 1.833 ± 0.916
4.399GluIle: 4.399 ± 1.514
3.299GluLys: 3.299 ± 0.7
8.065GluLeu: 8.065 ± 1.404
0.367GluMet: 0.367 ± 0.183
4.399GluAsn: 4.399 ± 1.209
1.833GluPro: 1.833 ± 0.459
1.466GluGln: 1.466 ± 0.392
3.666GluArg: 3.666 ± 1.448
5.499GluSer: 5.499 ± 1.414
2.933GluThr: 2.933 ± 1.466
5.132GluVal: 5.132 ± 0.813
0.367GluTrp: 0.367 ± 0.183
2.199GluTyr: 2.199 ± 0.605
0.0GluXaa: 0.0 ± 0.0
Phe
5.865PheAla: 5.865 ± 0.744
0.733PheCys: 0.733 ± 0.571
3.299PheAsp: 3.299 ± 1.148
5.132PheGlu: 5.132 ± 1.241
1.833PhePhe: 1.833 ± 0.573
4.399PheGly: 4.399 ± 2.322
1.1PheHis: 1.1 ± 0.55
2.199PheIle: 2.199 ± 0.987
2.933PheLys: 2.933 ± 1.124
7.698PheLeu: 7.698 ± 2.209
0.733PheMet: 0.733 ± 0.367
2.933PheAsn: 2.933 ± 0.92
1.1PhePro: 1.1 ± 0.614
1.466PheGln: 1.466 ± 0.427
3.299PheArg: 3.299 ± 0.79
6.965PheSer: 6.965 ± 2.348
5.865PheThr: 5.865 ± 0.847
2.933PheVal: 2.933 ± 1.466
0.733PheTrp: 0.733 ± 0.459
3.299PheTyr: 3.299 ± 0.835
0.0PheXaa: 0.0 ± 0.0
Gly
3.666GlyAla: 3.666 ± 0.65
4.032GlyCys: 4.032 ± 0.761
3.666GlyAsp: 3.666 ± 1.13
4.765GlyGlu: 4.765 ± 1.461
4.765GlyPhe: 4.765 ± 1.643
3.666GlyGly: 3.666 ± 0.842
1.466GlyHis: 1.466 ± 0.733
3.666GlyIle: 3.666 ± 1.129
4.765GlyLys: 4.765 ± 1.233
5.132GlyLeu: 5.132 ± 0.649
0.0GlyMet: 0.0 ± 0.0
1.833GlyAsn: 1.833 ± 1.029
0.367GlyPro: 0.367 ± 0.183
1.466GlyGln: 1.466 ± 0.733
3.666GlyArg: 3.666 ± 0.852
3.666GlySer: 3.666 ± 1.027
3.299GlyThr: 3.299 ± 1.001
4.399GlyVal: 4.399 ± 2.822
0.733GlyTrp: 0.733 ± 0.459
1.466GlyTyr: 1.466 ± 0.733
0.0GlyXaa: 0.0 ± 0.0
His
1.466HisAla: 1.466 ± 0.733
0.733HisCys: 0.733 ± 0.367
2.199HisAsp: 2.199 ± 1.1
1.833HisGlu: 1.833 ± 0.916
1.1HisPhe: 1.1 ± 0.55
1.466HisGly: 1.466 ± 0.934
0.733HisHis: 0.733 ± 0.367
0.367HisIle: 0.367 ± 0.183
0.733HisLys: 0.733 ± 0.459
3.299HisLeu: 3.299 ± 1.649
0.367HisMet: 0.367 ± 0.183
1.1HisAsn: 1.1 ± 0.55
0.733HisPro: 0.733 ± 0.367
0.0HisGln: 0.0 ± 0.0
1.466HisArg: 1.466 ± 0.427
3.299HisSer: 3.299 ± 1.352
1.466HisThr: 1.466 ± 0.812
1.833HisVal: 1.833 ± 0.719
0.0HisTrp: 0.0 ± 0.0
0.733HisTyr: 0.733 ± 0.571
0.0HisXaa: 0.0 ± 0.0
Ile
4.399IleAla: 4.399 ± 0.814
2.566IleCys: 2.566 ± 0.791
3.666IleAsp: 3.666 ± 1.216
3.299IleGlu: 3.299 ± 0.999
3.299IlePhe: 3.299 ± 1.216
2.566IleGly: 2.566 ± 1.9
1.1IleHis: 1.1 ± 0.614
1.833IleIle: 1.833 ± 1.579
3.299IleLys: 3.299 ± 0.79
4.032IleLeu: 4.032 ± 1.047
1.1IleMet: 1.1 ± 0.55
2.933IleAsn: 2.933 ± 0.358
1.1IlePro: 1.1 ± 0.55
2.933IleGln: 2.933 ± 0.842
2.933IleArg: 2.933 ± 1.852
2.933IleSer: 2.933 ± 0.844
2.566IleThr: 2.566 ± 1.091
1.833IleVal: 1.833 ± 1.586
0.0IleTrp: 0.0 ± 0.0
1.466IleTyr: 1.466 ± 0.733
0.0IleXaa: 0.0 ± 0.0
Lys
3.299LysAla: 3.299 ± 1.344
1.1LysCys: 1.1 ± 0.893
0.733LysAsp: 0.733 ± 0.514
4.765LysGlu: 4.765 ± 0.698
3.666LysPhe: 3.666 ± 0.831
5.132LysGly: 5.132 ± 1.323
1.1LysHis: 1.1 ± 0.55
2.566LysIle: 2.566 ± 0.709
4.399LysLys: 4.399 ± 1.617
6.232LysLeu: 6.232 ± 0.869
1.833LysMet: 1.833 ± 0.916
5.132LysAsn: 5.132 ± 1.015
3.299LysPro: 3.299 ± 0.888
2.199LysGln: 2.199 ± 0.814
2.566LysArg: 2.566 ± 0.963
4.765LysSer: 4.765 ± 1.313
3.666LysThr: 3.666 ± 0.857
4.032LysVal: 4.032 ± 0.872
0.733LysTrp: 0.733 ± 0.367
1.833LysTyr: 1.833 ± 0.475
0.0LysXaa: 0.0 ± 0.0
Leu
8.798LeuAla: 8.798 ± 2.023
1.833LeuCys: 1.833 ± 0.839
4.399LeuAsp: 4.399 ± 1.108
6.232LeuGlu: 6.232 ± 1.259
5.132LeuPhe: 5.132 ± 1.869
7.331LeuGly: 7.331 ± 1.386
3.299LeuHis: 3.299 ± 1.291
8.065LeuIle: 8.065 ± 3.135
8.065LeuLys: 8.065 ± 1.459
11.73LeuLeu: 11.73 ± 1.915
3.299LeuMet: 3.299 ± 1.344
5.132LeuAsn: 5.132 ± 0.715
4.399LeuPro: 4.399 ± 1.659
1.833LeuGln: 1.833 ± 0.703
5.132LeuArg: 5.132 ± 0.583
6.965LeuSer: 6.965 ± 1.88
6.965LeuThr: 6.965 ± 1.876
4.399LeuVal: 4.399 ± 1.617
0.0LeuTrp: 0.0 ± 0.0
2.566LeuTyr: 2.566 ± 0.752
0.0LeuXaa: 0.0 ± 0.0
Met
1.466MetAla: 1.466 ± 0.733
1.1MetCys: 1.1 ± 0.55
1.466MetAsp: 1.466 ± 0.728
1.1MetGlu: 1.1 ± 0.385
0.367MetPhe: 0.367 ± 0.183
0.367MetGly: 0.367 ± 0.183
0.0MetHis: 0.0 ± 0.0
0.367MetIle: 0.367 ± 0.183
1.1MetLys: 1.1 ± 0.55
3.299MetLeu: 3.299 ± 0.79
0.733MetMet: 0.733 ± 0.516
1.1MetAsn: 1.1 ± 0.55
1.1MetPro: 1.1 ± 0.614
1.1MetGln: 1.1 ± 0.672
1.1MetArg: 1.1 ± 0.55
0.367MetSer: 0.367 ± 0.183
0.733MetThr: 0.733 ± 0.95
1.1MetVal: 1.1 ± 0.385
0.0MetTrp: 0.0 ± 0.0
0.733MetTyr: 0.733 ± 0.459
0.0MetXaa: 0.0 ± 0.0
Asn
0.367AsnAla: 0.367 ± 0.577
3.666AsnCys: 3.666 ± 1.034
3.299AsnAsp: 3.299 ± 1.09
3.299AsnGlu: 3.299 ± 0.852
4.032AsnPhe: 4.032 ± 0.988
2.933AsnGly: 2.933 ± 0.64
1.466AsnHis: 1.466 ± 0.643
1.833AsnIle: 1.833 ± 0.568
3.299AsnLys: 3.299 ± 1.674
7.698AsnLeu: 7.698 ± 1.383
1.466AsnMet: 1.466 ± 0.733
1.833AsnAsn: 1.833 ± 0.827
0.733AsnPro: 0.733 ± 1.165
0.733AsnGln: 0.733 ± 0.367
3.299AsnArg: 3.299 ± 0.669
2.933AsnSer: 2.933 ± 0.784
1.833AsnThr: 1.833 ± 1.232
2.933AsnVal: 2.933 ± 1.15
0.733AsnTrp: 0.733 ± 0.459
1.833AsnTyr: 1.833 ± 0.827
0.0AsnXaa: 0.0 ± 0.0
Pro
3.299ProAla: 3.299 ± 0.7
1.1ProCys: 1.1 ± 0.55
2.199ProAsp: 2.199 ± 1.411
2.566ProGlu: 2.566 ± 0.755
1.833ProPhe: 1.833 ± 0.703
4.032ProGly: 4.032 ± 0.926
2.199ProHis: 2.199 ± 1.228
1.1ProIle: 1.1 ± 0.55
2.199ProLys: 2.199 ± 1.785
4.032ProLeu: 4.032 ± 1.469
0.733ProMet: 0.733 ± 0.367
0.367ProAsn: 0.367 ± 0.583
2.933ProPro: 2.933 ± 1.09
0.367ProGln: 0.367 ± 0.183
1.833ProArg: 1.833 ± 0.68
1.833ProSer: 1.833 ± 1.113
1.466ProThr: 1.466 ± 0.917
2.199ProVal: 2.199 ± 0.953
0.733ProTrp: 0.733 ± 0.367
1.833ProTyr: 1.833 ± 0.459
0.0ProXaa: 0.0 ± 0.0
Gln
1.833GlnAla: 1.833 ± 0.813
0.367GlnCys: 0.367 ± 0.183
0.733GlnAsp: 0.733 ± 0.638
1.466GlnGlu: 1.466 ± 0.733
2.199GlnPhe: 2.199 ± 0.554
2.199GlnGly: 2.199 ± 0.939
0.367GlnHis: 0.367 ± 0.183
1.1GlnIle: 1.1 ± 0.55
1.1GlnLys: 1.1 ± 0.55
2.199GlnLeu: 2.199 ± 0.781
0.0GlnMet: 0.0 ± 0.0
1.1GlnAsn: 1.1 ± 0.385
1.833GlnPro: 1.833 ± 1.336
0.733GlnGln: 0.733 ± 0.571
1.466GlnArg: 1.466 ± 0.573
1.1GlnSer: 1.1 ± 0.55
0.733GlnThr: 0.733 ± 0.367
1.833GlnVal: 1.833 ± 0.573
1.1GlnTrp: 1.1 ± 0.55
1.1GlnTyr: 1.1 ± 0.55
0.0GlnXaa: 0.0 ± 0.0
Arg
4.399ArgAla: 4.399 ± 1.487
3.299ArgCys: 3.299 ± 2.289
1.833ArgAsp: 1.833 ± 1.13
3.666ArgGlu: 3.666 ± 0.608
4.399ArgPhe: 4.399 ± 0.895
2.933ArgGly: 2.933 ± 0.853
1.1ArgHis: 1.1 ± 0.55
2.566ArgIle: 2.566 ± 0.801
1.1ArgLys: 1.1 ± 0.55
4.032ArgLeu: 4.032 ± 0.894
1.1ArgMet: 1.1 ± 0.614
2.566ArgAsn: 2.566 ± 1.281
1.833ArgPro: 1.833 ± 1.095
0.733ArgGln: 0.733 ± 0.459
3.666ArgArg: 3.666 ± 1.548
6.232ArgSer: 6.232 ± 1.217
2.566ArgThr: 2.566 ± 1.64
3.666ArgVal: 3.666 ± 1.146
0.367ArgTrp: 0.367 ± 0.183
1.833ArgTyr: 1.833 ± 0.583
0.0ArgXaa: 0.0 ± 0.0
Ser
3.666SerAla: 3.666 ± 1.146
1.833SerCys: 1.833 ± 1.906
2.933SerAsp: 2.933 ± 0.853
5.499SerGlu: 5.499 ± 0.774
5.865SerPhe: 5.865 ± 2.076
4.399SerGly: 4.399 ± 0.683
2.199SerHis: 2.199 ± 0.554
2.199SerIle: 2.199 ± 1.04
6.965SerLys: 6.965 ± 2.172
8.798SerLeu: 8.798 ± 2.833
1.466SerMet: 1.466 ± 0.64
3.299SerAsn: 3.299 ± 0.669
4.032SerPro: 4.032 ± 1.109
1.833SerGln: 1.833 ± 0.475
6.232SerArg: 6.232 ± 1.309
4.399SerSer: 4.399 ± 1.84
3.666SerThr: 3.666 ± 1.13
1.833SerVal: 1.833 ± 1.49
0.0SerTrp: 0.0 ± 0.0
1.833SerTyr: 1.833 ± 0.68
0.0SerXaa: 0.0 ± 0.0
Thr
2.566ThrAla: 2.566 ± 0.755
1.833ThrCys: 1.833 ± 1.173
2.566ThrAsp: 2.566 ± 0.357
3.666ThrGlu: 3.666 ± 1.579
6.598ThrPhe: 6.598 ± 1.517
2.566ThrGly: 2.566 ± 0.834
2.199ThrHis: 2.199 ± 0.605
3.299ThrIle: 3.299 ± 1.09
3.299ThrLys: 3.299 ± 0.895
4.399ThrLeu: 4.399 ± 1.356
0.733ThrMet: 0.733 ± 0.808
3.299ThrAsn: 3.299 ± 1.326
1.833ThrPro: 1.833 ± 1.029
0.367ThrGln: 0.367 ± 0.706
3.299ThrArg: 3.299 ± 3.43
4.032ThrSer: 4.032 ± 0.503
3.299ThrThr: 3.299 ± 1.09
5.132ThrVal: 5.132 ± 0.982
0.0ThrTrp: 0.0 ± 0.0
1.833ThrTyr: 1.833 ± 1.173
0.0ThrXaa: 0.0 ± 0.0
Val
4.032ValAla: 4.032 ± 1.004
3.666ValCys: 3.666 ± 1.48
2.566ValAsp: 2.566 ± 0.591
2.199ValGlu: 2.199 ± 1.1
3.299ValPhe: 3.299 ± 0.442
3.299ValGly: 3.299 ± 0.7
0.733ValHis: 0.733 ± 0.367
2.199ValIle: 2.199 ± 0.977
4.765ValLys: 4.765 ± 1.565
6.232ValLeu: 6.232 ± 1.178
1.1ValMet: 1.1 ± 0.385
2.933ValAsn: 2.933 ± 1.15
2.566ValPro: 2.566 ± 1.458
2.566ValGln: 2.566 ± 0.756
3.299ValArg: 3.299 ± 0.852
4.399ValSer: 4.399 ± 1.364
5.499ValThr: 5.499 ± 3.12
5.865ValVal: 5.865 ± 1.577
0.367ValTrp: 0.367 ± 0.583
1.466ValTyr: 1.466 ± 0.733
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.733TrpCys: 0.733 ± 0.571
1.1TrpAsp: 1.1 ± 1.033
0.367TrpGlu: 0.367 ± 0.583
0.367TrpPhe: 0.367 ± 0.183
0.367TrpGly: 0.367 ± 0.183
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.1TrpLeu: 1.1 ± 0.55
0.0TrpMet: 0.0 ± 0.0
1.466TrpAsn: 1.466 ± 0.392
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.367TrpSer: 0.367 ± 0.183
0.367TrpThr: 0.367 ± 0.183
0.733TrpVal: 0.733 ± 0.367
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.199TyrAla: 2.199 ± 2.385
1.833TyrCys: 1.833 ± 0.573
1.833TyrAsp: 1.833 ± 0.459
1.466TyrGlu: 1.466 ± 0.427
1.1TyrPhe: 1.1 ± 0.614
1.466TyrGly: 1.466 ± 0.733
0.0TyrHis: 0.0 ± 0.0
2.199TyrIle: 2.199 ± 1.1
1.466TyrLys: 1.466 ± 0.733
2.933TyrLeu: 2.933 ± 1.466
0.733TyrMet: 0.733 ± 0.459
2.199TyrAsn: 2.199 ± 0.772
2.566TyrPro: 2.566 ± 0.685
1.1TyrGln: 1.1 ± 0.614
1.1TyrArg: 1.1 ± 0.513
2.199TyrSer: 2.199 ± 0.605
1.466TyrThr: 1.466 ± 0.934
1.466TyrVal: 1.466 ± 0.427
0.367TyrTrp: 0.367 ± 0.183
0.367TyrTyr: 0.367 ± 0.183
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (2729 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski