Streptomyces luteoverticillatus (Streptoverticillium luteoverticillatus)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3Q9G105|A0A3Q9G105_STRLT Acyl-CoA dehydrogenase OS=Streptomyces luteoverticillatus OX=66425 GN=EKH77_19120 PE=3 SV=1
MM1 pKa = 7.82LSFEE5 pKa = 4.29QAAEE9 pKa = 3.85LARR12 pKa = 11.84IFLAEE17 pKa = 4.01KK18 pKa = 10.24SRR20 pKa = 11.84YY21 pKa = 7.78STLPMDD27 pKa = 4.59IVEE30 pKa = 4.66EE31 pKa = 4.04DD32 pKa = 3.16HH33 pKa = 7.25ALLDD37 pKa = 3.6GKK39 pKa = 10.56IYY41 pKa = 10.52FDD43 pKa = 4.23CQSIAYY49 pKa = 8.33LKK51 pKa = 10.7SGNPSDD57 pKa = 3.89MVIGTGYY64 pKa = 9.9ICVDD68 pKa = 4.13GEE70 pKa = 4.39TGDD73 pKa = 4.01CRR75 pKa = 11.84MLGAVEE81 pKa = 4.48SVEE84 pKa = 4.68LNLFEE89 pKa = 7.33DD90 pKa = 4.75DD91 pKa = 5.04DD92 pKa = 4.88FPGAPEE98 pKa = 3.61

Molecular weight: 10.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3Q9G0C3|A0A3Q9G0C3_STRLT Uncharacterized protein OS=Streptomyces luteoverticillatus OX=66425 GN=EKH77_27885 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILASRR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.36GRR40 pKa = 11.84ARR42 pKa = 11.84LSAA45 pKa = 3.91

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6118

0

6118

2059982

29

9511

336.7

35.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.936 ± 0.053

0.832 ± 0.009

5.882 ± 0.027

5.689 ± 0.036

2.724 ± 0.018

9.727 ± 0.033

2.352 ± 0.016

2.982 ± 0.023

2.208 ± 0.029

10.276 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.721 ± 0.013

1.708 ± 0.017

6.269 ± 0.031

2.506 ± 0.02

8.373 ± 0.036

4.845 ± 0.024

6.045 ± 0.03

8.398 ± 0.03

1.508 ± 0.013

2.018 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski