Frederiksenia canicola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Frederiksenia

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1971 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N4WDU5|A0A3N4WDU5_9PAST Uncharacterized protein OS=Frederiksenia canicola OX=123824 GN=EDC49_1336 PE=4 SV=1
MM1 pKa = 7.81SDD3 pKa = 2.79IQVPLTFTDD12 pKa = 3.72AAAKK16 pKa = 9.6KK17 pKa = 9.6VKK19 pKa = 10.5SLIEE23 pKa = 4.49GEE25 pKa = 4.46DD26 pKa = 3.6NPNLRR31 pKa = 11.84LRR33 pKa = 11.84VYY35 pKa = 9.12ITGGGCSGFQYY46 pKa = 11.03GFTFDD51 pKa = 4.83DD52 pKa = 3.68QVNDD56 pKa = 3.5GDD58 pKa = 4.74LTIEE62 pKa = 4.06NQNVGLVVDD71 pKa = 4.64PMSLQYY77 pKa = 11.06LIGGTVDD84 pKa = 3.37YY85 pKa = 11.67VEE87 pKa = 4.5GLEE90 pKa = 4.06GSRR93 pKa = 11.84FVVSNPNASSTCGCGSSFSII113 pKa = 5.02

Molecular weight: 12.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N4WTB1|A0A3N4WTB1_9PAST Uncharacterized protein (TIGR00156 family) OS=Frederiksenia canicola OX=123824 GN=EDC49_1315 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.91GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1971

0

1971

636187

29

3668

322.8

36.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.688 ± 0.064

0.99 ± 0.021

5.014 ± 0.042

6.347 ± 0.058

4.468 ± 0.051

6.71 ± 0.048

2.11 ± 0.027

6.704 ± 0.042

6.117 ± 0.048

10.516 ± 0.078

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.382 ± 0.032

4.637 ± 0.06

3.874 ± 0.038

4.888 ± 0.054

4.451 ± 0.043

5.809 ± 0.039

5.181 ± 0.043

6.819 ± 0.045

1.18 ± 0.02

3.113 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski