Sporosarcina luteola

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Planococcaceae; Sporosarcina

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3572 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A511Z532|A0A511Z532_9BACL Sulfur carrier protein FdhD OS=Sporosarcina luteola OX=582850 GN=fdhD PE=3 SV=1
MM1 pKa = 7.64SNTTRR6 pKa = 11.84PGRR9 pKa = 11.84NDD11 pKa = 3.31APICEE16 pKa = 4.85LLMNLPPLTALTEE29 pKa = 4.27VVVDD33 pKa = 5.26GIPFAVTSFININSDD48 pKa = 3.2TNLAYY53 pKa = 10.35FLSTVGTTLIVDD65 pKa = 4.54CDD67 pKa = 3.89SLSQVSFF74 pKa = 3.73

Molecular weight: 7.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A511ZCC9|A0A511ZCC9_9BACL 33 kDa chaperonin OS=Sporosarcina luteola OX=582850 GN=hslO PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 9.59RR3 pKa = 11.84TFQPNKK9 pKa = 8.24RR10 pKa = 11.84KK11 pKa = 9.6RR12 pKa = 11.84SKK14 pKa = 9.83VHH16 pKa = 5.77GFRR19 pKa = 11.84ARR21 pKa = 11.84MSSKK25 pKa = 10.14SGRR28 pKa = 11.84NILAARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.84GRR39 pKa = 11.84KK40 pKa = 8.75VLSAA44 pKa = 4.05

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3572

0

3572

1034920

39

2038

289.7

32.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.5 ± 0.043

0.612 ± 0.011

5.41 ± 0.037

7.726 ± 0.052

4.584 ± 0.031

7.08 ± 0.044

2.007 ± 0.02

7.681 ± 0.047

6.405 ± 0.036

9.589 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.049 ± 0.018

4.043 ± 0.028

3.619 ± 0.024

3.403 ± 0.024

4.297 ± 0.032

5.955 ± 0.026

5.593 ± 0.036

7.174 ± 0.03

0.981 ± 0.014

3.293 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski