Arthrobacter phage Adaia

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 28 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G2KCU7|A0A3G2KCU7_9CAUD HNH endonuclease OS=Arthrobacter phage Adaia OX=2419945 GN=28 PE=4 SV=1
MM1 pKa = 7.51AALAIEE7 pKa = 4.44SGIPPSVLEE16 pKa = 4.47RR17 pKa = 11.84EE18 pKa = 3.87PSEE21 pKa = 4.19YY22 pKa = 10.79LEE24 pKa = 4.42TMCYY28 pKa = 9.86LAIHH32 pKa = 7.11RR33 pKa = 11.84YY34 pKa = 10.2DD35 pKa = 3.53EE36 pKa = 4.67TEE38 pKa = 3.9GKK40 pKa = 10.19

Molecular weight: 4.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G2KCQ9|A0A3G2KCQ9_9CAUD Uncharacterized protein OS=Arthrobacter phage Adaia OX=2419945 GN=19 PE=4 SV=1
MM1 pKa = 8.0AEE3 pKa = 4.34PLIKK7 pKa = 10.6VYY9 pKa = 10.74GGPEE13 pKa = 3.15LRR15 pKa = 11.84ARR17 pKa = 11.84MRR19 pKa = 11.84KK20 pKa = 9.87AGVEE24 pKa = 4.02MQNLRR29 pKa = 11.84DD30 pKa = 3.56ANARR34 pKa = 11.84VAKK37 pKa = 9.84VAEE40 pKa = 4.35GGIRR44 pKa = 11.84AAAPKK49 pKa = 10.34KK50 pKa = 9.9SGRR53 pKa = 11.84LAGTIRR59 pKa = 11.84SSGTLRR65 pKa = 11.84AAIVRR70 pKa = 11.84AGYY73 pKa = 9.96KK74 pKa = 7.89ATPYY78 pKa = 10.49AGPNNWGWPDD88 pKa = 3.1GAAGIRR94 pKa = 11.84GSFGGDD100 pKa = 2.82FWAQAGARR108 pKa = 11.84ATEE111 pKa = 4.35SAWVAVYY118 pKa = 10.12HH119 pKa = 6.89SEE121 pKa = 3.82IQKK124 pKa = 10.34IADD127 pKa = 3.39QVV129 pKa = 3.3

Molecular weight: 13.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

28

0

28

4967

40

638

177.4

19.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.1 ± 0.728

0.443 ± 0.195

5.174 ± 0.484

5.798 ± 0.527

3.282 ± 0.269

8.979 ± 0.659

1.651 ± 0.296

5.355 ± 0.537

5.194 ± 0.639

8.073 ± 0.314

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.637 ± 0.22

3.886 ± 0.328

4.57 ± 0.499

4.047 ± 0.347

4.912 ± 0.514

6.161 ± 0.288

6.906 ± 0.508

6.785 ± 0.487

1.852 ± 0.174

2.194 ± 0.285
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski