Photobacterium lipolyticum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4228 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T3N529|A0A2T3N529_9GAMM Cytochrome c biogenesis ATP-binding export protein CcmA OS=Photobacterium lipolyticum OX=266810 GN=ccmA PE=3 SV=1
MM1 pKa = 7.65KK2 pKa = 9.08KK3 pKa = 8.28TLLALAVPALLAAGSATAGVNLYY26 pKa = 10.53DD27 pKa = 4.29ADD29 pKa = 4.13GVKK32 pKa = 9.93TDD34 pKa = 3.97LSGAAEE40 pKa = 3.9VQYY43 pKa = 10.54FQGYY47 pKa = 8.56EE48 pKa = 4.0EE49 pKa = 4.87NSDD52 pKa = 3.13AKK54 pKa = 10.65IRR56 pKa = 11.84LDD58 pKa = 4.96DD59 pKa = 4.56GDD61 pKa = 4.38LAVNTTVAVSGSLNAVAGLAFEE83 pKa = 4.59MEE85 pKa = 4.64SGDD88 pKa = 3.74VTNDD92 pKa = 3.46EE93 pKa = 4.59LWVGLAGDD101 pKa = 4.99FGTLTIGRR109 pKa = 11.84QYY111 pKa = 11.18LIADD115 pKa = 3.79DD116 pKa = 4.15SGIGKK121 pKa = 10.02DD122 pKa = 3.81YY123 pKa = 11.24EE124 pKa = 4.36LGGDD128 pKa = 3.52GLDD131 pKa = 3.33FVVANGDD138 pKa = 3.33QTIKK142 pKa = 11.04YY143 pKa = 9.97LFDD146 pKa = 3.83NGQFYY151 pKa = 11.05AGASALLKK159 pKa = 9.38EE160 pKa = 4.39TGKK163 pKa = 10.83AEE165 pKa = 4.71DD166 pKa = 3.78EE167 pKa = 4.41TTVFDD172 pKa = 3.91GRR174 pKa = 11.84LGARR178 pKa = 11.84FGDD181 pKa = 3.76LDD183 pKa = 3.69ARR185 pKa = 11.84VYY187 pKa = 10.5LYY189 pKa = 10.92SSSDD193 pKa = 3.19VDD195 pKa = 3.48GGDD198 pKa = 2.86IFGSVLDD205 pKa = 4.33GVAIDD210 pKa = 3.8VEE212 pKa = 4.79GFNLEE217 pKa = 4.02AEE219 pKa = 4.46YY220 pKa = 10.14IYY222 pKa = 11.19NAFAFAASFGQVEE235 pKa = 4.75YY236 pKa = 11.32KK237 pKa = 10.62NAANSADD244 pKa = 3.7KK245 pKa = 11.32VDD247 pKa = 3.74VDD249 pKa = 4.08TAALAGSYY257 pKa = 10.21TMDD260 pKa = 2.98RR261 pKa = 11.84TTFAVGYY268 pKa = 8.18TYY270 pKa = 11.38LDD272 pKa = 4.12FEE274 pKa = 7.01ADD276 pKa = 3.77DD277 pKa = 3.86VSAFYY282 pKa = 11.46ANVTQQLHH290 pKa = 6.38SNVKK294 pKa = 8.9VYY296 pKa = 11.26GEE298 pKa = 4.53IGSSDD303 pKa = 3.42ADD305 pKa = 3.3NSEE308 pKa = 4.16FGYY311 pKa = 9.59VAGMEE316 pKa = 4.3VSFF319 pKa = 5.08

Molecular weight: 33.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T3MSZ1|A0A2T3MSZ1_9GAMM ATP-dependent protease OS=Photobacterium lipolyticum OX=266810 GN=C9I89_20030 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 9.37RR14 pKa = 11.84NHH16 pKa = 5.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84ATINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.74GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSKK44 pKa = 10.84

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4228

0

4228

1369385

26

2525

323.9

35.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.862 ± 0.042

1.123 ± 0.013

5.591 ± 0.035

6.251 ± 0.038

3.98 ± 0.028

6.911 ± 0.037

2.252 ± 0.018

6.407 ± 0.029

5.137 ± 0.032

10.442 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.711 ± 0.021

4.149 ± 0.028

3.996 ± 0.021

4.585 ± 0.034

4.742 ± 0.031

6.349 ± 0.033

5.375 ± 0.023

6.941 ± 0.037

1.227 ± 0.016

2.97 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski