Paenibacillus paeoniae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5044 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A371P7L8|A0A371P7L8_9BACL Glycoside hydrolase family 16 protein OS=Paenibacillus paeoniae OX=2292705 GN=DX130_19750 PE=4 SV=1
MM1 pKa = 7.31RR2 pKa = 11.84HH3 pKa = 5.94IVTVWGAHH11 pKa = 5.5FSSEE15 pKa = 4.17DD16 pKa = 3.32EE17 pKa = 3.87LAAFVEE23 pKa = 4.42TLYY26 pKa = 11.28DD27 pKa = 3.74EE28 pKa = 6.26DD29 pKa = 5.76GDD31 pKa = 4.42ALLSDD36 pKa = 4.93FEE38 pKa = 5.17DD39 pKa = 4.32SIGSDD44 pKa = 3.94GIDD47 pKa = 3.22EE48 pKa = 4.88DD49 pKa = 4.51FMEE52 pKa = 4.3IHH54 pKa = 6.7HH55 pKa = 6.88LNDD58 pKa = 3.43EE59 pKa = 4.32EE60 pKa = 4.11EE61 pKa = 4.08QLAFIQYY68 pKa = 9.81LKK70 pKa = 10.72SEE72 pKa = 4.36YY73 pKa = 10.78VPDD76 pKa = 4.2DD77 pKa = 3.66SFVNGLPATINEE89 pKa = 4.43SIKK92 pKa = 10.19PYY94 pKa = 10.81NSIILVSGSDD104 pKa = 3.47SPYY107 pKa = 10.42GSINEE112 pKa = 4.29EE113 pKa = 3.67LFQFDD118 pKa = 3.77KK119 pKa = 11.51ADD121 pKa = 3.71VEE123 pKa = 4.52SDD125 pKa = 3.81SPVVLLTSVEE135 pKa = 4.25YY136 pKa = 10.38EE137 pKa = 4.16GRR139 pKa = 3.6

Molecular weight: 15.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A371P7U4|A0A371P7U4_9BACL 30S ribosomal protein S6 OS=Paenibacillus paeoniae OX=2292705 GN=rpsF PE=3 SV=1
MM1 pKa = 7.9RR2 pKa = 11.84PTFKK6 pKa = 10.84PNVSKK11 pKa = 10.73RR12 pKa = 11.84AKK14 pKa = 8.72VHH16 pKa = 5.43GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 10.18NGRR28 pKa = 11.84KK29 pKa = 8.78VLAARR34 pKa = 11.84RR35 pKa = 11.84QRR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.84VLSAA44 pKa = 4.11

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5044

0

5044

1661949

26

4634

329.5

36.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.314 ± 0.037

0.693 ± 0.009

5.142 ± 0.026

6.81 ± 0.043

4.005 ± 0.025

7.481 ± 0.052

2.147 ± 0.02

6.81 ± 0.032

5.15 ± 0.029

10.234 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.886 ± 0.02

3.748 ± 0.029

3.895 ± 0.021

3.789 ± 0.022

5.124 ± 0.034

6.591 ± 0.029

5.446 ± 0.053

6.933 ± 0.028

1.281 ± 0.015

3.521 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski