Aeromonas sp. RU39B

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; unclassified Aeromonas

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3949 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1N6P317|A0A1N6P317_9GAMM Transcriptional regulator XRE family with cupin sensor OS=Aeromonas sp. RU39B OX=1907416 GN=SAMN05880558_101423 PE=4 SV=1
MM1 pKa = 6.88TTLGWIDD8 pKa = 3.32IDD10 pKa = 3.71GVRR13 pKa = 11.84YY14 pKa = 9.57AWDD17 pKa = 3.8GDD19 pKa = 4.02DD20 pKa = 6.39RR21 pKa = 11.84IDD23 pKa = 4.23CYY25 pKa = 11.52GQFGYY30 pKa = 8.33HH31 pKa = 5.69TALGGHH37 pKa = 6.25QLTQLEE43 pKa = 4.4IEE45 pKa = 4.29NPEE48 pKa = 3.79GDD50 pKa = 3.48VAGVLEE56 pKa = 4.13VDD58 pKa = 4.85FASGAVHH65 pKa = 6.26FTPTPGVDD73 pKa = 3.04SHH75 pKa = 7.03GITLLLGSEE84 pKa = 5.06FGQSEE89 pKa = 4.61VEE91 pKa = 4.09LASLSSEE98 pKa = 3.96GWDD101 pKa = 3.53DD102 pKa = 4.52LLGVDD107 pKa = 4.82EE108 pKa = 5.96GLPDD112 pKa = 3.41WTPTRR117 pKa = 11.84VEE119 pKa = 4.11TAHH122 pKa = 6.95AGAGQVLTWEE132 pKa = 4.35SFGLQEE138 pKa = 5.09SAGLLNEE145 pKa = 4.09GHH147 pKa = 7.29DD148 pKa = 4.2GQGQSTLALSDD159 pKa = 4.01LLVMEE164 pKa = 5.34HH165 pKa = 7.23APIQLDD171 pKa = 4.04LPPIVPDD178 pKa = 3.39VV179 pKa = 3.36

Molecular weight: 19.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1N6YG11|A0A1N6YG11_9GAMM Iron complex transport system permease protein OS=Aeromonas sp. RU39B OX=1907416 GN=SAMN05880558_10942 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.2RR12 pKa = 11.84KK13 pKa = 7.57RR14 pKa = 11.84THH16 pKa = 5.9GFRR19 pKa = 11.84ARR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 9.07VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.11GRR39 pKa = 11.84ARR41 pKa = 11.84LVVV44 pKa = 3.3

Molecular weight: 5.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3949

0

3949

1259776

29

3532

319.0

35.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.472 ± 0.045

1.133 ± 0.016

5.196 ± 0.035

5.803 ± 0.04

3.57 ± 0.027

7.722 ± 0.034

2.479 ± 0.021

5.119 ± 0.033

3.569 ± 0.039

11.967 ± 0.076

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.648 ± 0.019

2.967 ± 0.029

4.567 ± 0.025

4.667 ± 0.033

6.144 ± 0.044

5.9 ± 0.037

4.983 ± 0.039

7.066 ± 0.031

1.465 ± 0.018

2.563 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski