Serinibacter salmoneus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Beutenbergiaceae; Serinibacter

Average proteome isoelectric point is 6.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2863 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2A9D1Y5|A0A2A9D1Y5_9MICO Transcriptional regulator AbiEi antitoxin Type IV TA system OS=Serinibacter salmoneus OX=556530 GN=ATL40_2294 PE=4 SV=1
MM1 pKa = 7.55SSPRR5 pKa = 11.84ATTRR9 pKa = 11.84IRR11 pKa = 11.84RR12 pKa = 11.84TRR14 pKa = 11.84PALIAACTALLALATACTPEE34 pKa = 6.0DD35 pKa = 4.47GEE37 pKa = 5.02SPDD40 pKa = 4.19PTPSAAPEE48 pKa = 4.12DD49 pKa = 4.0ATTDD53 pKa = 3.51GSITGDD59 pKa = 3.47LTLSDD64 pKa = 5.21LGPDD68 pKa = 3.25GDD70 pKa = 4.04TTVFPGGSAQAAVDD84 pKa = 3.59QVEE87 pKa = 4.25QVVDD91 pKa = 3.62QVLADD96 pKa = 3.6TGVPGAAVAIVTGDD110 pKa = 3.27EE111 pKa = 3.92VLYY114 pKa = 10.42TGGFGVRR121 pKa = 11.84DD122 pKa = 3.94LTTGEE127 pKa = 4.19PVDD130 pKa = 4.14AEE132 pKa = 4.65TVFQIASVSKK142 pKa = 10.3SVGATVVATQVTDD155 pKa = 4.91GVVSWDD161 pKa = 4.38DD162 pKa = 3.46PSHH165 pKa = 6.38TYY167 pKa = 10.61LPEE170 pKa = 6.14LEE172 pKa = 5.78LSDD175 pKa = 3.77AWVSEE180 pKa = 3.91HH181 pKa = 5.53VTIGDD186 pKa = 4.4LYY188 pKa = 9.69SHH190 pKa = 6.68RR191 pKa = 11.84TGLPHH196 pKa = 7.55AAGDD200 pKa = 3.87LLEE203 pKa = 5.72DD204 pKa = 3.03IGYY207 pKa = 10.04DD208 pKa = 2.94RR209 pKa = 11.84TEE211 pKa = 3.44ILQRR215 pKa = 11.84LVYY218 pKa = 10.41QPLNPFRR225 pKa = 11.84TSYY228 pKa = 11.28AYY230 pKa = 10.53ANYY233 pKa = 7.83GTTAGGEE240 pKa = 4.36AVAHH244 pKa = 6.11AAGTTWEE251 pKa = 5.04DD252 pKa = 3.31LSQDD256 pKa = 3.41ALYY259 pKa = 10.73DD260 pKa = 3.93PLGMTSTSSRR270 pKa = 11.84HH271 pKa = 4.5VDD273 pKa = 3.18YY274 pKa = 10.95EE275 pKa = 3.94AAANRR280 pKa = 11.84ATLHH284 pKa = 6.18MYY286 pKa = 10.68LGDD289 pKa = 3.84GEE291 pKa = 4.61FEE293 pKa = 4.36HH294 pKa = 7.27VAEE297 pKa = 5.25RR298 pKa = 11.84DD299 pKa = 3.61PDD301 pKa = 3.87PQSPAGGVSSTASDD315 pKa = 3.67LALWLQLLLNDD326 pKa = 4.07GVGPQGQEE334 pKa = 3.93LIAPEE339 pKa = 4.33ALQPAITPQSFSAPASVPQARR360 pKa = 11.84SGSYY364 pKa = 10.45GYY366 pKa = 10.66GFNVGVTAGGQPKK379 pKa = 9.93LSHH382 pKa = 6.46SGAFVIGTGTSFVVLPGLDD401 pKa = 3.45VAVVALTNGGPVGAAEE417 pKa = 5.62AITASLADD425 pKa = 3.65LAEE428 pKa = 4.44YY429 pKa = 11.3GEE431 pKa = 4.42VTRR434 pKa = 11.84DD435 pKa = 2.76WAAGYY440 pKa = 9.06GALFEE445 pKa = 5.33PYY447 pKa = 9.07HH448 pKa = 7.1APVGDD453 pKa = 4.53LAEE456 pKa = 4.22QDD458 pKa = 3.98PPADD462 pKa = 3.21AAAPQDD468 pKa = 3.44LATYY472 pKa = 8.6TGAWEE477 pKa = 3.63NDD479 pKa = 3.59YY480 pKa = 11.25YY481 pKa = 11.61GEE483 pKa = 4.24AVVSVAGEE491 pKa = 4.04TLVAEE496 pKa = 5.01LGPDD500 pKa = 3.1GGYY503 pKa = 10.41VLEE506 pKa = 4.26LQPWDD511 pKa = 3.34GDD513 pKa = 3.65TFAFVPTGEE522 pKa = 4.05NAPLGSLSSATFTVPDD538 pKa = 3.63GTARR542 pKa = 11.84AEE544 pKa = 4.14TMTLEE549 pKa = 4.35FFDD552 pKa = 3.94ATGLGTWTRR561 pKa = 11.84ANN563 pKa = 3.4

Molecular weight: 58.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2A9D417|A0A2A9D417_9MICO DNA invertase Pin-like site-specific DNA recombinase OS=Serinibacter salmoneus OX=556530 GN=ATL40_2312 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.64HH17 pKa = 5.77RR18 pKa = 11.84KK19 pKa = 7.85LLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84HH26 pKa = 3.6QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2863

0

2863

984522

32

2222

343.9

36.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.292 ± 0.069

0.552 ± 0.01

5.786 ± 0.04

6.147 ± 0.053

2.519 ± 0.028

9.25 ± 0.04

2.097 ± 0.025

3.727 ± 0.028

1.385 ± 0.026

10.27 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.836 ± 0.019

1.595 ± 0.022

5.772 ± 0.033

2.895 ± 0.027

7.595 ± 0.051

5.454 ± 0.033

6.341 ± 0.043

9.082 ± 0.047

1.549 ± 0.023

1.857 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski