Arthrobacter phage Qui

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 247 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B8WGD0|A0A5B8WGD0_9CAUD Membrane protein OS=Arthrobacter phage Qui OX=2603260 GN=53 PE=4 SV=1
MM1 pKa = 7.89TEE3 pKa = 4.33LTWGNYY9 pKa = 6.95GEE11 pKa = 4.9RR12 pKa = 11.84YY13 pKa = 9.77YY14 pKa = 10.44EE15 pKa = 3.98TGVDD19 pKa = 3.49RR20 pKa = 11.84GVLYY24 pKa = 10.94LPGQDD29 pKa = 2.72GVVWNGLIAVNEE41 pKa = 4.35SPSGGEE47 pKa = 3.57PTPYY51 pKa = 10.76YY52 pKa = 10.69LDD54 pKa = 3.32GVKK57 pKa = 10.41YY58 pKa = 10.51LNRR61 pKa = 11.84PSPEE65 pKa = 3.83EE66 pKa = 3.57YY67 pKa = 9.88RR68 pKa = 11.84ATIEE72 pKa = 4.21AYY74 pKa = 8.77TYY76 pKa = 9.13PDD78 pKa = 3.31EE79 pKa = 5.57FAFCDD84 pKa = 4.36GSAGIDD90 pKa = 3.7LEE92 pKa = 4.88SKK94 pKa = 10.79GLTATQQGRR103 pKa = 11.84KK104 pKa = 8.93PFGFSYY110 pKa = 9.2RR111 pKa = 11.84TRR113 pKa = 11.84IGNDD117 pKa = 3.14DD118 pKa = 3.82LATNFGYY125 pKa = 10.7KK126 pKa = 9.95LHH128 pKa = 6.52IVYY131 pKa = 10.19NALAAPSEE139 pKa = 4.15KK140 pKa = 10.28SYY142 pKa = 11.15QSSSDD147 pKa = 3.59DD148 pKa = 3.43PEE150 pKa = 6.61AISFSWDD157 pKa = 2.69ITTTPIVVSEE167 pKa = 4.05AGTYY171 pKa = 10.04SSHH174 pKa = 7.05LVLDD178 pKa = 4.97TKK180 pKa = 7.35TTWPWVITAVEE191 pKa = 3.92EE192 pKa = 4.05LLYY195 pKa = 9.69GTEE198 pKa = 4.32DD199 pKa = 3.69TPPTLPTPQDD209 pKa = 4.2LIDD212 pKa = 4.61LFVEE216 pKa = 3.99NALLKK221 pKa = 9.86ITDD224 pKa = 4.11NGDD227 pKa = 3.66GTWTAEE233 pKa = 4.24GPDD236 pKa = 4.88EE237 pKa = 5.18IIQMLNATEE246 pKa = 4.9FQISWPSAVYY256 pKa = 10.48LDD258 pKa = 4.1EE259 pKa = 4.35DD260 pKa = 4.62TYY262 pKa = 11.21TISSLL267 pKa = 3.61

Molecular weight: 29.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B8WHT6|A0A5B8WHT6_9CAUD DNA-directed DNA polymerase OS=Arthrobacter phage Qui OX=2603260 GN=109 PE=4 SV=1
MM1 pKa = 7.11ARR3 pKa = 11.84SRR5 pKa = 11.84KK6 pKa = 9.58RR7 pKa = 11.84YY8 pKa = 9.9GLGKK12 pKa = 10.34FLFDD16 pKa = 5.99LILGFLTCGIWWIFLLFKK34 pKa = 10.08FFRR37 pKa = 11.84TNSS40 pKa = 3.27

Molecular weight: 4.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

247

0

247

35067

33

1516

142.0

15.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.933 ± 0.316

0.827 ± 0.076

6.225 ± 0.192

7.337 ± 0.306

3.602 ± 0.115

6.989 ± 0.324

1.996 ± 0.111

6.165 ± 0.158

6.835 ± 0.249

7.785 ± 0.197

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.849 ± 0.105

4.58 ± 0.111

4.155 ± 0.155

3.12 ± 0.112

5.053 ± 0.223

5.889 ± 0.179

6.339 ± 0.222

6.89 ± 0.149

1.848 ± 0.107

3.582 ± 0.179
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski