Rodent Torque teno virus 2
Average proteome isoelectric point is 6.86
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>tr|X2G4Y3|X2G4Y3_9VIRU Capsid protein OS=Rodent Torque teno virus 2 OX=1514665 PE=3 SV=1
MM1 pKa = 7.36 NPSILAFKK9 pKa = 9.81 QQEE12 pKa = 4.04 ALFRR16 pKa = 11.84 QAVRR20 pKa = 11.84 AQHH23 pKa = 7.11 RR24 pKa = 11.84 LFCDD28 pKa = 3.31 CGDD31 pKa = 3.97 PVQHH35 pKa = 6.6 LLGWRR40 pKa = 11.84 TSTGGPFVTLAGTTTGEE57 pKa = 4.16 DD58 pKa = 3.22 TGEE61 pKa = 4.33 GGSMEE66 pKa = 5.0 LDD68 pKa = 3.6 GEE70 pKa = 4.52 HH71 pKa = 5.89 TAEE74 pKa = 4.23 GG75 pKa = 3.67
Molecular weight: 8.03 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 4.868
IPC2_protein 4.94
IPC_protein 4.749
Toseland 4.685
ProMoST 4.889
Dawson 4.736
Bjellqvist 4.876
Wikipedia 4.609
Rodwell 4.647
Grimsley 4.596
Solomon 4.724
Lehninger 4.685
Nozaki 4.863
DTASelect 4.978
Thurlkill 4.685
EMBOSS 4.635
Sillero 4.927
Patrickios 3.961
IPC_peptide 4.736
IPC2_peptide 4.914
IPC2.peptide.svr19 4.89
Protein with the highest isoelectric point:
>tr|X2G4Y3|X2G4Y3_9VIRU Capsid protein OS=Rodent Torque teno virus 2 OX=1514665 PE=3 SV=1
MM1 pKa = 7.73 AYY3 pKa = 10.08 FYY5 pKa = 10.77 RR6 pKa = 11.84 RR7 pKa = 11.84 TLRR10 pKa = 11.84 YY11 pKa = 8.78 PRR13 pKa = 11.84 RR14 pKa = 11.84 NYY16 pKa = 9.21 YY17 pKa = 9.02 RR18 pKa = 11.84 RR19 pKa = 11.84 RR20 pKa = 11.84 YY21 pKa = 8.94 RR22 pKa = 11.84 RR23 pKa = 11.84 RR24 pKa = 11.84 RR25 pKa = 11.84 QYY27 pKa = 8.08 GTRR30 pKa = 11.84 RR31 pKa = 11.84 RR32 pKa = 11.84 TYY34 pKa = 8.4 RR35 pKa = 11.84 RR36 pKa = 11.84 RR37 pKa = 11.84 IRR39 pKa = 11.84 RR40 pKa = 11.84 PGKK43 pKa = 7.01 WRR45 pKa = 11.84 RR46 pKa = 11.84 YY47 pKa = 6.96 YY48 pKa = 9.03 RR49 pKa = 11.84 QYY51 pKa = 11.22 SRR53 pKa = 11.84 RR54 pKa = 11.84 HH55 pKa = 4.72 AAKK58 pKa = 9.72 IVQWNPAVRR67 pKa = 11.84 TKK69 pKa = 10.88 CKK71 pKa = 10.27 IIGLTPLMMALGADD85 pKa = 3.55 SGIQDD90 pKa = 5.04 FILPTTSAVVLWKK103 pKa = 10.91 GGGVDD108 pKa = 4.52 SGTLSLLDD116 pKa = 4.63 LYY118 pKa = 10.49 WEE120 pKa = 4.12 EE121 pKa = 4.25 RR122 pKa = 11.84 FWRR125 pKa = 11.84 ARR127 pKa = 11.84 WSKK130 pKa = 11.21 SNQGYY135 pKa = 8.65 NLCRR139 pKa = 11.84 YY140 pKa = 9.5 FGVKK144 pKa = 8.62 LTLYY148 pKa = 10.17 RR149 pKa = 11.84 LQHH152 pKa = 5.28 HH153 pKa = 6.67 TYY155 pKa = 9.07 IFWWTVEE162 pKa = 4.72 DD163 pKa = 4.09 FTDD166 pKa = 3.9 DD167 pKa = 3.82 QEE169 pKa = 4.59 PLTVCHH175 pKa = 6.81 PSQLLLTRR183 pKa = 11.84 NHH185 pKa = 6.12 VLVKK189 pKa = 10.25 HH190 pKa = 5.81 YY191 pKa = 10.82 GSNRR195 pKa = 11.84 QVDD198 pKa = 3.47 KK199 pKa = 11.0 AVRR202 pKa = 11.84 IKK204 pKa = 10.51 IPPPTYY210 pKa = 10.49 LDD212 pKa = 4.12 SSWHH216 pKa = 4.78 TFKK219 pKa = 11.14 DD220 pKa = 3.36 IAKK223 pKa = 9.98 KK224 pKa = 10.13 PLLKK228 pKa = 9.99 WRR230 pKa = 11.84 ASLIDD235 pKa = 4.08 TEE237 pKa = 4.72 NPWTGYY243 pKa = 9.02 PDD245 pKa = 3.29 NRR247 pKa = 11.84 VGLRR251 pKa = 11.84 IYY253 pKa = 10.36 LWSWDD258 pKa = 3.63 TATKK262 pKa = 9.67 TGKK265 pKa = 9.21 QAEE268 pKa = 4.49 VMYY271 pKa = 9.13 FPPLDD276 pKa = 4.04 EE277 pKa = 5.11 GNNTQICIHH286 pKa = 6.21 KK287 pKa = 10.37 ADD289 pKa = 4.13 WNNEE293 pKa = 3.78 GTGPKK298 pKa = 9.45 QDD300 pKa = 4.73 AANFWPDD307 pKa = 3.41 RR308 pKa = 11.84 NDD310 pKa = 2.84 RR311 pKa = 11.84 WEE313 pKa = 4.07 TLVVPFYY320 pKa = 10.67 MFTFGRR326 pKa = 11.84 NAEE329 pKa = 4.06 WYY331 pKa = 6.9 DD332 pKa = 3.92 TNRR335 pKa = 11.84 HH336 pKa = 4.46 RR337 pKa = 11.84 HH338 pKa = 4.9 LPKK341 pKa = 10.3 PEE343 pKa = 4.13 PEE345 pKa = 4.01 GNMGYY350 pKa = 10.52 FLYY353 pKa = 10.73 VKK355 pKa = 10.31 HH356 pKa = 6.45 NSNPAWRR363 pKa = 11.84 DD364 pKa = 3.0 GVTGQLITTWEE375 pKa = 4.3 MAFMTYY381 pKa = 8.11 NTAQRR386 pKa = 11.84 IAASGPWVEE395 pKa = 5.56 KK396 pKa = 10.64 GIQAPGINVTMRR408 pKa = 11.84 YY409 pKa = 9.62 SFQFQWGGRR418 pKa = 11.84 PGTKK422 pKa = 10.06 LPPEE426 pKa = 4.66 APDD429 pKa = 3.0 TGGPHH434 pKa = 6.05 WPKK437 pKa = 9.97 ATYY440 pKa = 9.56 RR441 pKa = 11.84 WPGSLRR447 pKa = 11.84 ADD449 pKa = 2.74 IRR451 pKa = 11.84 DD452 pKa = 3.57 PTEE455 pKa = 3.76 INHH458 pKa = 6.19 EE459 pKa = 4.22 VLQGEE464 pKa = 5.14 DD465 pKa = 3.79 YY466 pKa = 10.87 DD467 pKa = 4.22 SSGIITEE474 pKa = 4.23 GAFRR478 pKa = 11.84 RR479 pKa = 11.84 VAKK482 pKa = 9.37 PHH484 pKa = 6.23 YY485 pKa = 9.87 ISTDD489 pKa = 3.1 EE490 pKa = 5.26 KK491 pKa = 9.95 DD492 pKa = 3.94 WIWGRR497 pKa = 11.84 LRR499 pKa = 11.84 HH500 pKa = 5.97 PPPSKK505 pKa = 10.29 RR506 pKa = 11.84 KK507 pKa = 7.81 RR508 pKa = 11.84 QRR510 pKa = 11.84 PSSEE514 pKa = 3.49 EE515 pKa = 4.05 RR516 pKa = 11.84 EE517 pKa = 4.11 TDD519 pKa = 3.43 GSKK522 pKa = 10.91 EE523 pKa = 4.45 DD524 pKa = 3.53 YY525 pKa = 9.18 TQASEE530 pKa = 4.55 TEE532 pKa = 4.46 TEE534 pKa = 4.32 TEE536 pKa = 4.13 TEE538 pKa = 4.11 DD539 pKa = 3.71 EE540 pKa = 4.28 LGHH543 pKa = 5.65 RR544 pKa = 11.84 RR545 pKa = 11.84 KK546 pKa = 10.11 RR547 pKa = 11.84 NKK549 pKa = 10.08 LRR551 pKa = 11.84 ILLDD555 pKa = 3.4 RR556 pKa = 11.84 LEE558 pKa = 4.37 IRR560 pKa = 11.84 PHH562 pKa = 6.08 ILTNRR567 pKa = 11.84 SGNWEE572 pKa = 4.05 SASII576 pKa = 3.8
Molecular weight: 68.21 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 8.857
IPC2_protein 9.399
IPC_protein 9.648
Toseland 9.853
ProMoST 9.692
Dawson 10.131
Bjellqvist 9.867
Wikipedia 10.35
Rodwell 10.335
Grimsley 10.233
Solomon 10.16
Lehninger 10.101
Nozaki 9.867
DTASelect 9.867
Thurlkill 9.955
EMBOSS 10.277
Sillero 10.043
Patrickios 5.372
IPC_peptide 10.145
IPC2_peptide 8.639
IPC2.peptide.svr19 8.447
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
2
0
2
651
75
576
325.5
38.12
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
5.53 ± 1.118
0.922 ± 0.79
5.376 ± 0.019
5.837 ± 0.979
3.226 ± 0.954
7.68 ± 3.161
3.072 ± 0.42
4.455 ± 1.412
4.762 ± 1.551
7.22 ± 0.956
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
1.69 ± 0.442
3.994 ± 1.204
6.298 ± 1.04
3.84 ± 1.279
10.445 ± 2.313
4.762 ± 0.345
8.141 ± 1.143
3.84 ± 0.072
4.147 ± 1.273
4.762 ± 2.155
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here