Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_539

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.259AlaAla: 2.259 ± 1.204
2.259AlaCys: 2.259 ± 1.229
3.012AlaAsp: 3.012 ± 1.912
5.271AlaGlu: 5.271 ± 2.487
2.259AlaPhe: 2.259 ± 0.798
6.777AlaGly: 6.777 ± 2.278
2.259AlaHis: 2.259 ± 0.798
3.012AlaIle: 3.012 ± 2.083
3.012AlaLys: 3.012 ± 1.38
2.259AlaLeu: 2.259 ± 1.123
0.753AlaMet: 0.753 ± 0.479
4.518AlaAsn: 4.518 ± 1.698
3.012AlaPro: 3.012 ± 2.066
5.271AlaGln: 5.271 ± 3.164
2.259AlaArg: 2.259 ± 1.019
1.506AlaSer: 1.506 ± 0.912
2.259AlaThr: 2.259 ± 1.019
5.271AlaVal: 5.271 ± 2.06
0.753AlaTrp: 0.753 ± 1.069
6.024AlaTyr: 6.024 ± 1.319
0.0AlaXaa: 0.0 ± 0.0
Cys
0.753CysAla: 0.753 ± 0.968
0.0CysCys: 0.0 ± 0.0
0.753CysAsp: 0.753 ± 0.516
0.753CysGlu: 0.753 ± 1.069
1.506CysPhe: 1.506 ± 0.714
3.012CysGly: 3.012 ± 3.008
0.753CysHis: 0.753 ± 0.516
1.506CysIle: 1.506 ± 0.714
1.506CysLys: 1.506 ± 0.714
0.753CysLeu: 0.753 ± 0.752
0.0CysMet: 0.0 ± 0.0
0.753CysAsn: 0.753 ± 0.516
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
2.259CysArg: 2.259 ± 2.256
0.0CysSer: 0.0 ± 0.0
0.753CysThr: 0.753 ± 0.752
0.0CysVal: 0.0 ± 0.0
1.506CysTrp: 1.506 ± 0.714
0.753CysTyr: 0.753 ± 0.516
0.0CysXaa: 0.0 ± 0.0
Asp
3.012AspAla: 3.012 ± 1.132
1.506AspCys: 1.506 ± 0.714
2.259AspAsp: 2.259 ± 0.993
3.012AspGlu: 3.012 ± 1.491
5.271AspPhe: 5.271 ± 1.777
0.0AspGly: 0.0 ± 0.0
1.506AspHis: 1.506 ± 1.033
1.506AspIle: 1.506 ± 0.566
3.765AspLys: 3.765 ± 2.079
3.012AspLeu: 3.012 ± 1.067
0.753AspMet: 0.753 ± 0.733
3.765AspAsn: 3.765 ± 1.65
0.0AspPro: 0.0 ± 0.0
0.0AspGln: 0.0 ± 0.0
0.753AspArg: 0.753 ± 0.516
7.53AspSer: 7.53 ± 3.094
3.765AspThr: 3.765 ± 2.163
4.518AspVal: 4.518 ± 2.187
1.506AspTrp: 1.506 ± 1.504
3.765AspTyr: 3.765 ± 1.238
0.0AspXaa: 0.0 ± 0.0
Glu
3.765GluAla: 3.765 ± 2.251
0.0GluCys: 0.0 ± 0.0
2.259GluAsp: 2.259 ± 2.2
3.012GluGlu: 3.012 ± 1.301
2.259GluPhe: 2.259 ± 1.274
2.259GluGly: 2.259 ± 0.798
0.0GluHis: 0.0 ± 0.0
4.518GluIle: 4.518 ± 1.333
4.518GluLys: 4.518 ± 1.85
5.271GluLeu: 5.271 ± 1.569
0.753GluMet: 0.753 ± 0.516
5.271GluAsn: 5.271 ± 1.179
2.259GluPro: 2.259 ± 1.123
3.012GluGln: 3.012 ± 1.912
3.765GluArg: 3.765 ± 1.791
2.259GluSer: 2.259 ± 1.942
2.259GluThr: 2.259 ± 1.385
3.765GluVal: 3.765 ± 2.359
1.506GluTrp: 1.506 ± 1.033
3.765GluTyr: 3.765 ± 2.034
0.0GluXaa: 0.0 ± 0.0
Phe
2.259PheAla: 2.259 ± 0.798
1.506PheCys: 1.506 ± 1.033
3.012PheAsp: 3.012 ± 1.433
2.259PheGlu: 2.259 ± 1.385
0.753PhePhe: 0.753 ± 0.516
6.777PheGly: 6.777 ± 1.804
1.506PheHis: 1.506 ± 0.566
4.518PheIle: 4.518 ± 0.926
2.259PheLys: 2.259 ± 0.993
3.765PheLeu: 3.765 ± 1.552
1.506PheMet: 1.506 ± 1.504
1.506PheAsn: 1.506 ± 1.467
4.518PhePro: 4.518 ± 1.913
2.259PheGln: 2.259 ± 1.372
2.259PheArg: 2.259 ± 0.535
3.012PheSer: 3.012 ± 0.988
2.259PheThr: 2.259 ± 1.204
3.012PheVal: 3.012 ± 0.953
0.753PheTrp: 0.753 ± 0.733
0.753PheTyr: 0.753 ± 0.733
0.0PheXaa: 0.0 ± 0.0
Gly
2.259GlyAla: 2.259 ± 1.385
0.753GlyCys: 0.753 ± 0.752
1.506GlyAsp: 1.506 ± 0.909
4.518GlyGlu: 4.518 ± 1.518
1.506GlyPhe: 1.506 ± 1.109
5.271GlyGly: 5.271 ± 2.689
0.753GlyHis: 0.753 ± 0.516
2.259GlyIle: 2.259 ± 1.274
3.012GlyLys: 3.012 ± 1.067
8.283GlyLeu: 8.283 ± 1.737
2.259GlyMet: 2.259 ± 1.499
3.765GlyAsn: 3.765 ± 0.897
0.753GlyPro: 0.753 ± 0.516
4.518GlyGln: 4.518 ± 1.595
2.259GlyArg: 2.259 ± 1.549
6.024GlySer: 6.024 ± 3.377
4.518GlyThr: 4.518 ± 1.595
5.271GlyVal: 5.271 ± 0.74
0.0GlyTrp: 0.0 ± 0.0
3.765GlyTyr: 3.765 ± 1.026
0.0GlyXaa: 0.0 ± 0.0
His
2.259HisAla: 2.259 ± 0.993
0.753HisCys: 0.753 ± 0.752
0.0HisAsp: 0.0 ± 0.0
3.012HisGlu: 3.012 ± 1.035
0.753HisPhe: 0.753 ± 0.516
0.753HisGly: 0.753 ± 0.968
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
0.0HisLys: 0.0 ± 0.0
0.753HisLeu: 0.753 ± 0.733
0.753HisMet: 0.753 ± 0.516
0.753HisAsn: 0.753 ± 0.516
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.753HisArg: 0.753 ± 0.516
0.0HisSer: 0.0 ± 0.0
3.012HisThr: 3.012 ± 0.528
2.259HisVal: 2.259 ± 1.549
0.753HisTrp: 0.753 ± 0.516
0.753HisTyr: 0.753 ± 0.752
0.0HisXaa: 0.0 ± 0.0
Ile
2.259IleAla: 2.259 ± 1.471
1.506IleCys: 1.506 ± 0.714
3.765IleAsp: 3.765 ± 1.283
2.259IleGlu: 2.259 ± 1.671
3.765IlePhe: 3.765 ± 1.881
3.765IleGly: 3.765 ± 1.928
1.506IleHis: 1.506 ± 1.504
2.259IleIle: 2.259 ± 0.535
3.012IleLys: 3.012 ± 2.095
2.259IleLeu: 2.259 ± 0.798
0.753IleMet: 0.753 ± 0.516
3.012IleAsn: 3.012 ± 1.132
4.518IlePro: 4.518 ± 1.649
3.765IleGln: 3.765 ± 1.248
1.506IleArg: 1.506 ± 1.364
6.777IleSer: 6.777 ± 2.614
3.765IleThr: 3.765 ± 2.058
2.259IleVal: 2.259 ± 1.549
0.0IleTrp: 0.0 ± 0.0
1.506IleTyr: 1.506 ± 1.056
0.0IleXaa: 0.0 ± 0.0
Lys
4.518LysAla: 4.518 ± 1.698
0.753LysCys: 0.753 ± 0.516
3.765LysAsp: 3.765 ± 1.026
0.753LysGlu: 0.753 ± 0.752
4.518LysPhe: 4.518 ± 1.573
1.506LysGly: 1.506 ± 0.909
0.0LysHis: 0.0 ± 0.0
4.518LysIle: 4.518 ± 1.446
6.024LysLys: 6.024 ± 1.473
1.506LysLeu: 1.506 ± 0.714
2.259LysMet: 2.259 ± 1.291
6.777LysAsn: 6.777 ± 4.01
3.012LysPro: 3.012 ± 1.427
0.753LysGln: 0.753 ± 0.968
3.012LysArg: 3.012 ± 1.742
4.518LysSer: 4.518 ± 0.936
1.506LysThr: 1.506 ± 1.467
3.765LysVal: 3.765 ± 2.362
0.753LysTrp: 0.753 ± 0.516
3.012LysTyr: 3.012 ± 0.528
0.0LysXaa: 0.0 ± 0.0
Leu
3.765LeuAla: 3.765 ± 2.163
0.0LeuCys: 0.0 ± 0.0
1.506LeuAsp: 1.506 ± 1.033
3.012LeuGlu: 3.012 ± 0.528
4.518LeuPhe: 4.518 ± 1.366
4.518LeuGly: 4.518 ± 1.9
1.506LeuHis: 1.506 ± 1.364
4.518LeuIle: 4.518 ± 2.37
8.283LeuLys: 8.283 ± 1.978
3.765LeuLeu: 3.765 ± 2.633
4.518LeuMet: 4.518 ± 0.851
6.024LeuAsn: 6.024 ± 0.867
4.518LeuPro: 4.518 ± 1.002
4.518LeuGln: 4.518 ± 0.83
6.777LeuArg: 6.777 ± 1.218
6.777LeuSer: 6.777 ± 1.962
6.024LeuThr: 6.024 ± 2.352
0.0LeuVal: 0.0 ± 0.0
1.506LeuTrp: 1.506 ± 0.714
3.012LeuTyr: 3.012 ± 0.988
0.0LeuXaa: 0.0 ± 0.0
Met
1.506MetAla: 1.506 ± 0.566
1.506MetCys: 1.506 ± 0.714
0.753MetAsp: 0.753 ± 0.752
2.259MetGlu: 2.259 ± 1.842
1.506MetPhe: 1.506 ± 1.056
1.506MetGly: 1.506 ± 0.912
0.0MetHis: 0.0 ± 0.0
1.506MetIle: 1.506 ± 1.109
0.753MetLys: 0.753 ± 0.752
2.259MetLeu: 2.259 ± 1.842
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
0.753MetPro: 0.753 ± 0.516
0.753MetGln: 0.753 ± 0.516
0.753MetArg: 0.753 ± 0.733
4.518MetSer: 4.518 ± 1.9
1.506MetThr: 1.506 ± 0.714
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
5.271AsnAla: 5.271 ± 1.125
0.753AsnCys: 0.753 ± 0.752
3.765AsnAsp: 3.765 ± 1.238
5.271AsnGlu: 5.271 ± 1.816
1.506AsnPhe: 1.506 ± 0.909
5.271AsnGly: 5.271 ± 1.412
0.753AsnHis: 0.753 ± 0.516
2.259AsnIle: 2.259 ± 1.204
3.012AsnLys: 3.012 ± 1.912
10.542AsnLeu: 10.542 ± 2.569
0.753AsnMet: 0.753 ± 0.733
3.012AsnAsn: 3.012 ± 0.528
5.271AsnPro: 5.271 ± 1.895
1.506AsnGln: 1.506 ± 1.364
2.259AsnArg: 2.259 ± 1.926
6.024AsnSer: 6.024 ± 0.876
3.765AsnThr: 3.765 ± 0.805
6.024AsnVal: 6.024 ± 1.92
0.753AsnTrp: 0.753 ± 0.516
2.259AsnTyr: 2.259 ± 1.385
0.0AsnXaa: 0.0 ± 0.0
Pro
5.271ProAla: 5.271 ± 2.378
0.753ProCys: 0.753 ± 0.752
2.259ProAsp: 2.259 ± 0.896
2.259ProGlu: 2.259 ± 1.123
0.753ProPhe: 0.753 ± 0.752
0.753ProGly: 0.753 ± 0.516
2.259ProHis: 2.259 ± 0.993
4.518ProIle: 4.518 ± 1.649
3.012ProLys: 3.012 ± 0.953
4.518ProLeu: 4.518 ± 2.141
0.753ProMet: 0.753 ± 0.516
0.753ProAsn: 0.753 ± 0.733
0.753ProPro: 0.753 ± 0.752
0.753ProGln: 0.753 ± 0.968
3.012ProArg: 3.012 ± 1.427
3.765ProSer: 3.765 ± 1.209
3.765ProThr: 3.765 ± 1.244
2.259ProVal: 2.259 ± 1.229
0.753ProTrp: 0.753 ± 0.516
1.506ProTyr: 1.506 ± 1.033
0.0ProXaa: 0.0 ± 0.0
Gln
3.765GlnAla: 3.765 ± 1.733
0.0GlnCys: 0.0 ± 0.0
1.506GlnAsp: 1.506 ± 0.714
0.753GlnGlu: 0.753 ± 0.516
1.506GlnPhe: 1.506 ± 0.714
3.012GlnGly: 3.012 ± 2.066
0.0GlnHis: 0.0 ± 0.0
1.506GlnIle: 1.506 ± 1.276
1.506GlnLys: 1.506 ± 0.714
4.518GlnLeu: 4.518 ± 1.85
0.753GlnMet: 0.753 ± 0.733
4.518GlnAsn: 4.518 ± 0.962
1.506GlnPro: 1.506 ± 1.109
2.259GlnGln: 2.259 ± 1.123
4.518GlnArg: 4.518 ± 1.302
6.024GlnSer: 6.024 ± 3.348
3.765GlnThr: 3.765 ± 2.251
2.259GlnVal: 2.259 ± 0.798
0.0GlnTrp: 0.0 ± 0.0
1.506GlnTyr: 1.506 ± 1.467
0.0GlnXaa: 0.0 ± 0.0
Arg
4.518ArgAla: 4.518 ± 1.041
1.506ArgCys: 1.506 ± 1.109
3.765ArgAsp: 3.765 ± 2.034
3.765ArgGlu: 3.765 ± 1.308
1.506ArgPhe: 1.506 ± 0.909
3.012ArgGly: 3.012 ± 1.413
1.506ArgHis: 1.506 ± 0.566
3.012ArgIle: 3.012 ± 0.953
2.259ArgLys: 2.259 ± 1.372
3.012ArgLeu: 3.012 ± 1.38
0.0ArgMet: 0.0 ± 0.648
3.012ArgAsn: 3.012 ± 0.528
2.259ArgPro: 2.259 ± 0.993
0.0ArgGln: 0.0 ± 0.0
0.753ArgArg: 0.753 ± 1.069
2.259ArgSer: 2.259 ± 0.798
1.506ArgThr: 1.506 ± 0.714
2.259ArgVal: 2.259 ± 1.381
1.506ArgTrp: 1.506 ± 1.056
3.765ArgTyr: 3.765 ± 1.65
0.0ArgXaa: 0.0 ± 0.0
Ser
6.777SerAla: 6.777 ± 1.382
1.506SerCys: 1.506 ± 1.504
4.518SerAsp: 4.518 ± 1.415
6.024SerGlu: 6.024 ± 2.021
3.012SerPhe: 3.012 ± 2.311
3.012SerGly: 3.012 ± 1.132
1.506SerHis: 1.506 ± 0.912
4.518SerIle: 4.518 ± 1.002
3.765SerLys: 3.765 ± 1.283
6.777SerLeu: 6.777 ± 0.575
2.259SerMet: 2.259 ± 2.046
6.777SerAsn: 6.777 ± 2.004
3.765SerPro: 3.765 ± 0.596
6.024SerGln: 6.024 ± 2.373
2.259SerArg: 2.259 ± 0.535
9.036SerSer: 9.036 ± 3.795
2.259SerThr: 2.259 ± 1.204
7.53SerVal: 7.53 ± 2.499
0.753SerTrp: 0.753 ± 0.733
2.259SerTyr: 2.259 ± 0.993
0.0SerXaa: 0.0 ± 0.0
Thr
6.024ThrAla: 6.024 ± 1.738
0.753ThrCys: 0.753 ± 0.752
3.765ThrAsp: 3.765 ± 1.733
2.259ThrGlu: 2.259 ± 0.535
4.518ThrPhe: 4.518 ± 0.936
4.518ThrGly: 4.518 ± 1.216
0.0ThrHis: 0.0 ± 0.0
2.259ThrIle: 2.259 ± 0.535
4.518ThrLys: 4.518 ± 0.936
6.777ThrLeu: 6.777 ± 1.449
0.753ThrMet: 0.753 ± 0.968
3.012ThrAsn: 3.012 ± 1.818
0.0ThrPro: 0.0 ± 0.0
2.259ThrGln: 2.259 ± 2.2
0.753ThrArg: 0.753 ± 0.733
3.765ThrSer: 3.765 ± 1.209
2.259ThrThr: 2.259 ± 1.471
3.765ThrVal: 3.765 ± 1.244
0.0ThrTrp: 0.0 ± 0.0
3.012ThrTyr: 3.012 ± 0.953
0.0ThrXaa: 0.0 ± 0.0
Val
2.259ValAla: 2.259 ± 1.274
1.506ValCys: 1.506 ± 0.714
2.259ValAsp: 2.259 ± 0.798
3.765ValGlu: 3.765 ± 1.748
3.012ValPhe: 3.012 ± 1.491
3.765ValGly: 3.765 ± 1.552
0.0ValHis: 0.0 ± 0.0
3.012ValIle: 3.012 ± 1.631
2.259ValLys: 2.259 ± 1.471
5.271ValLeu: 5.271 ± 1.581
0.0ValMet: 0.0 ± 0.0
7.53ValAsn: 7.53 ± 1.725
6.024ValPro: 6.024 ± 2.487
1.506ValGln: 1.506 ± 1.056
3.765ValArg: 3.765 ± 1.299
4.518ValSer: 4.518 ± 0.83
3.765ValThr: 3.765 ± 1.881
3.765ValVal: 3.765 ± 1.649
0.0ValTrp: 0.0 ± 0.0
3.012ValTyr: 3.012 ± 1.132
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
2.259TrpAsp: 2.259 ± 1.229
0.753TrpGlu: 0.753 ± 0.516
3.012TrpPhe: 3.012 ± 1.035
0.0TrpGly: 0.0 ± 0.0
0.753TrpHis: 0.753 ± 0.516
0.753TrpIle: 0.753 ± 0.516
0.753TrpLys: 0.753 ± 0.516
2.259TrpLeu: 2.259 ± 0.993
0.0TrpMet: 0.0 ± 0.0
0.753TrpAsn: 0.753 ± 0.516
0.0TrpPro: 0.0 ± 0.0
1.506TrpGln: 1.506 ± 0.714
0.0TrpArg: 0.0 ± 0.0
1.506TrpSer: 1.506 ± 0.909
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.506TyrAla: 1.506 ± 0.714
0.0TyrCys: 0.0 ± 0.0
4.518TyrAsp: 4.518 ± 1.041
1.506TyrGlu: 1.506 ± 1.056
3.012TyrPhe: 3.012 ± 0.988
3.765TyrGly: 3.765 ± 1.399
0.753TyrHis: 0.753 ± 0.752
2.259TyrIle: 2.259 ± 0.993
0.0TyrLys: 0.0 ± 0.0
1.506TyrLeu: 1.506 ± 1.504
1.506TyrMet: 1.506 ± 0.566
4.518TyrAsn: 4.518 ± 1.333
1.506TyrPro: 1.506 ± 1.033
4.518TyrGln: 4.518 ± 0.83
2.259TyrArg: 2.259 ± 1.549
4.518TyrSer: 4.518 ± 1.002
2.259TyrThr: 2.259 ± 1.204
3.012TyrVal: 3.012 ± 0.953
1.506TyrTrp: 1.506 ± 0.714
3.765TyrTyr: 3.765 ± 1.026
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1329 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski