Sorangiineae bacterium NIC37A_2

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Sorangiineae; unclassified Sorangiineae

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4071 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W9QGE6|A0A1W9QGE6_9DELT Fer2_BFD domain-containing protein OS=Sorangiineae bacterium NIC37A_2 OX=1970199 GN=B6A08_03530 PE=4 SV=1
MM1 pKa = 7.49GGALSFGGGDD11 pKa = 3.48EE12 pKa = 4.38VVLIDD17 pKa = 6.31DD18 pKa = 5.1FDD20 pKa = 7.2DD21 pKa = 5.2DD22 pKa = 4.83DD23 pKa = 6.69ALFEE27 pKa = 5.1SNGLNGGWYY36 pKa = 10.05AYY38 pKa = 10.67GDD40 pKa = 3.99GSNGTLTHH48 pKa = 6.38SEE50 pKa = 4.02GLVPVSGGVRR60 pKa = 11.84GGALRR65 pKa = 11.84VQSEE69 pKa = 4.73GFTAWGSVFGAYY81 pKa = 10.11LSEE84 pKa = 4.25GCLYY88 pKa = 10.85DD89 pKa = 4.78GSAFDD94 pKa = 5.3GLTFYY99 pKa = 11.43AKK101 pKa = 10.29GQVEE105 pKa = 4.46GGPNQEE111 pKa = 3.71LSVRR115 pKa = 11.84LVSLEE120 pKa = 4.27DD121 pKa = 3.56MPPEE125 pKa = 4.12QGGTCDD131 pKa = 3.49SDD133 pKa = 3.27CWNSHH138 pKa = 4.85RR139 pKa = 11.84VNIEE143 pKa = 3.41VGGCWRR149 pKa = 11.84RR150 pKa = 11.84YY151 pKa = 7.33SFRR154 pKa = 11.84FDD156 pKa = 2.85EE157 pKa = 4.77FLRR160 pKa = 11.84AGQSTSSVVPSEE172 pKa = 3.77LHH174 pKa = 6.89LIDD177 pKa = 4.51FALSTVDD184 pKa = 5.49SADD187 pKa = 2.95VWLDD191 pKa = 3.31EE192 pKa = 4.21LAFFIGDD199 pKa = 3.42APGEE203 pKa = 4.09EE204 pKa = 4.83EE205 pKa = 4.51ICDD208 pKa = 3.53

Molecular weight: 22.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W9QCZ8|A0A1W9QCZ8_9DELT Uncharacterized protein OS=Sorangiineae bacterium NIC37A_2 OX=1970199 GN=B6A08_10125 PE=4 SV=1
MM1 pKa = 7.62AIWARR6 pKa = 11.84MARR9 pKa = 11.84AWAVRR14 pKa = 11.84PWTLRR19 pKa = 11.84AGMSVRR25 pKa = 11.84VGVRR29 pKa = 11.84SVLAALFQAPVVPRR43 pKa = 11.84QGEE46 pKa = 4.3GMPLAGARR54 pKa = 11.84LGAPRR59 pKa = 11.84QAAPQAVATLLVVLRR74 pKa = 11.84AQGARR79 pKa = 11.84IRR81 pKa = 11.84GARR84 pKa = 11.84AQARR88 pKa = 11.84VARR91 pKa = 11.84TPVGPGGG98 pKa = 3.43

Molecular weight: 10.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4071

0

4071

1466748

33

3805

360.3

39.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.182 ± 0.043

1.059 ± 0.024

5.268 ± 0.032

7.175 ± 0.047

3.62 ± 0.024

8.834 ± 0.061

1.896 ± 0.015

4.043 ± 0.029

3.359 ± 0.032

10.786 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.693 ± 0.016

2.172 ± 0.023

5.928 ± 0.037

2.936 ± 0.018

7.699 ± 0.047

6.714 ± 0.034

5.061 ± 0.024

7.285 ± 0.034

1.146 ± 0.014

2.139 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski