Citricoccus sp. SGAir0253

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Citricoccus; unclassified Citricoccus

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2944 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P9JAH5|A0A4P9JAH5_9MICC Glycosyltransferase family 9 protein OS=Citricoccus sp. SGAir0253 OX=2567881 GN=E7744_07695 PE=4 SV=1
MM1 pKa = 6.76KK2 pKa = 9.18TARR5 pKa = 11.84LEE7 pKa = 4.36SPAVRR12 pKa = 11.84AAALAAVTVPFLAACGGGADD32 pKa = 4.11GGEE35 pKa = 4.27TLTFAAIPAEE45 pKa = 4.26SSASLEE51 pKa = 3.91SDD53 pKa = 3.52YY54 pKa = 12.01SNITALIEE62 pKa = 4.01QEE64 pKa = 4.08TGVDD68 pKa = 3.61VEE70 pKa = 4.49FQNASDD76 pKa = 3.83YY77 pKa = 11.44AAVIEE82 pKa = 4.37GQRR85 pKa = 11.84AGQIDD90 pKa = 3.76IASYY94 pKa = 11.09GPFSYY99 pKa = 10.89VIAKK103 pKa = 10.39DD104 pKa = 3.17SGVNIEE110 pKa = 4.6PVAAPTSDD118 pKa = 3.36QDD120 pKa = 3.49KK121 pKa = 10.48QPAYY125 pKa = 9.64TSLAYY130 pKa = 10.42VRR132 pKa = 11.84ADD134 pKa = 4.2SDD136 pKa = 3.69IQDD139 pKa = 3.99LADD142 pKa = 3.95LEE144 pKa = 4.55GKK146 pKa = 9.57KK147 pKa = 10.26VCFVDD152 pKa = 3.61AASTSGYY159 pKa = 9.41LVPMKK164 pKa = 10.72GLLDD168 pKa = 3.76EE169 pKa = 6.2GIDD172 pKa = 4.07LNTEE176 pKa = 3.99TEE178 pKa = 3.91AVLAGGHH185 pKa = 6.27DD186 pKa = 4.03ASLLSLDD193 pKa = 5.23AGSCDD198 pKa = 3.49AAFAHH203 pKa = 6.43DD204 pKa = 3.9TMLNTLVTSGQVDD217 pKa = 3.9EE218 pKa = 5.44GALKK222 pKa = 9.93PVWEE226 pKa = 4.48SAPITEE232 pKa = 5.64DD233 pKa = 4.27PIALNMDD240 pKa = 4.26TIEE243 pKa = 4.94PEE245 pKa = 3.86LAEE248 pKa = 4.27QISTVIRR255 pKa = 11.84EE256 pKa = 4.31KK257 pKa = 10.98ANKK260 pKa = 8.25PALVEE265 pKa = 4.11AGICASEE272 pKa = 4.22EE273 pKa = 4.12DD274 pKa = 4.04CVLPEE279 pKa = 4.38EE280 pKa = 4.56IEE282 pKa = 4.16YY283 pKa = 10.43GYY285 pKa = 11.23LPVDD289 pKa = 4.5DD290 pKa = 5.65SDD292 pKa = 3.77FDD294 pKa = 4.84AIRR297 pKa = 11.84EE298 pKa = 4.05ICAATDD304 pKa = 3.09ADD306 pKa = 3.9ACHH309 pKa = 6.61SVGG312 pKa = 4.61

Molecular weight: 32.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P9JBT8|A0A4P9JBT8_9MICC ABC transporter substrate-binding protein OS=Citricoccus sp. SGAir0253 OX=2567881 GN=E7744_09900 PE=4 SV=1
MM1 pKa = 7.41RR2 pKa = 11.84WARR5 pKa = 11.84PSSSAPRR12 pKa = 11.84TPSPAPAGPASRR24 pKa = 11.84SPTPARR30 pKa = 11.84TARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84PRR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84GRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84PVRR47 pKa = 11.84PRR49 pKa = 11.84PAPTVRR55 pKa = 11.84RR56 pKa = 11.84GAARR60 pKa = 11.84GGG62 pKa = 3.48

Molecular weight: 6.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2944

0

2944

1013340

32

2154

344.2

36.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.018 ± 0.072

0.594 ± 0.011

5.842 ± 0.042

5.979 ± 0.042

2.739 ± 0.029

9.903 ± 0.047

2.256 ± 0.021

3.27 ± 0.031

1.605 ± 0.032

10.113 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.881 ± 0.02

1.701 ± 0.022

6.178 ± 0.04

2.793 ± 0.028

7.923 ± 0.054

4.92 ± 0.031

5.971 ± 0.033

8.895 ± 0.046

1.509 ± 0.02

1.913 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski