Tropicimonas sp. IMCC6043

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Tropicimonas; unclassified Tropicimonas

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5038 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q3Z7Z2|A0A4Q3Z7Z2_9RHOB Nucleoside triphosphate pyrophosphohydrolase OS=Tropicimonas sp. IMCC6043 OX=2510645 GN=EU800_12730 PE=4 SV=1
MM1 pKa = 6.42FTSRR5 pKa = 11.84IAICTAISMLALAGTASAQSAGEE28 pKa = 3.87WTLGFGAAYY37 pKa = 10.78SMPKK41 pKa = 9.48YY42 pKa = 10.51DD43 pKa = 5.0NGYY46 pKa = 9.84FDD48 pKa = 5.97PDD50 pKa = 3.53NTSSNQTVTVSDD62 pKa = 3.77TASLTFTGEE71 pKa = 3.63YY72 pKa = 10.01FIWDD76 pKa = 3.59NVGVEE81 pKa = 4.53LLVPLPFSHH90 pKa = 6.84SADD93 pKa = 3.38VEE95 pKa = 4.64DD96 pKa = 3.99YY97 pKa = 11.18GKK99 pKa = 10.61AVDD102 pKa = 4.13LTYY105 pKa = 10.2FAPTLSLQYY114 pKa = 10.23HH115 pKa = 5.79FRR117 pKa = 11.84ASEE120 pKa = 3.99QISYY124 pKa = 10.87LIGLGVNYY132 pKa = 9.51STFTDD137 pKa = 3.64VSTSGDD143 pKa = 3.79LKK145 pKa = 11.38GLDD148 pKa = 3.87LDD150 pKa = 4.03VDD152 pKa = 3.9NSFGGALHH160 pKa = 7.12LGLDD164 pKa = 3.83YY165 pKa = 11.16WMSDD169 pKa = 3.28DD170 pKa = 3.79SAIRR174 pKa = 11.84ADD176 pKa = 3.91MRR178 pKa = 11.84WISIDD183 pKa = 3.12TDD185 pKa = 3.35ADD187 pKa = 3.58AGGSRR192 pKa = 11.84VGEE195 pKa = 3.96IEE197 pKa = 3.93VDD199 pKa = 3.63PFILGLSYY207 pKa = 10.32IRR209 pKa = 11.84KK210 pKa = 8.69FF211 pKa = 3.35

Molecular weight: 22.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1V6Q4|A0A4V1V6Q4_9RHOB Peptidoglycan-binding protein OS=Tropicimonas sp. IMCC6043 OX=2510645 GN=EU800_12775 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5038

0

5038

1561054

24

10442

309.9

33.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.638 ± 0.049

0.905 ± 0.013

5.865 ± 0.035

6.194 ± 0.03

3.762 ± 0.023

8.83 ± 0.043

2.001 ± 0.018

5.116 ± 0.025

2.702 ± 0.03

10.229 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.648 ± 0.022

2.401 ± 0.022

5.247 ± 0.032

2.779 ± 0.015

7.174 ± 0.046

5.245 ± 0.032

5.345 ± 0.032

7.369 ± 0.03

1.41 ± 0.016

2.142 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski