Fusarium oxysporum f. sp. cubense (strain race 1) (Panama disease fungus)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium oxysporum species complex; Fusarium oxysporum; Fusarium oxysporum f. sp. cubense

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15355 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|N4U470|N4U470_FUSC1 Hexose transporter HXT13 OS=Fusarium oxysporum f. sp. cubense (strain race 1) OX=1229664 GN=FOC1_g10000036 PE=3 SV=1
MM1 pKa = 6.95VRR3 pKa = 11.84YY4 pKa = 10.08SILAVAFAILGAEE17 pKa = 4.45ASPCRR22 pKa = 11.84PTTVTSVTEE31 pKa = 4.06ASSTIASDD39 pKa = 3.64TTVTALATTVTTALVEE55 pKa = 4.46TTSTAVAEE63 pKa = 4.51TTTTTEE69 pKa = 3.68APACVEE75 pKa = 4.15TQVVVNPGFDD85 pKa = 3.98DD86 pKa = 3.79SDD88 pKa = 4.44SNKK91 pKa = 10.35SPWFGDD97 pKa = 3.47GSLTTDD103 pKa = 4.51GPNTAPNAISFVFSNGQGSAQLSQTLTNLDD133 pKa = 3.01GNYY136 pKa = 9.8RR137 pKa = 11.84LSYY140 pKa = 9.37NWAVVSGVNVGAGFSCSITPKK161 pKa = 10.14VRR163 pKa = 11.84GDD165 pKa = 3.83TLPGADD171 pKa = 3.42PSEE174 pKa = 4.31FVGWTPEE181 pKa = 3.98SQTWSSGSEE190 pKa = 3.56AVAQADD196 pKa = 3.53LSFVLEE202 pKa = 4.59CFGEE206 pKa = 4.01YY207 pKa = 10.29DD208 pKa = 3.33QLTINVDD215 pKa = 3.9DD216 pKa = 3.59ITFTKK221 pKa = 10.75LCGPP225 pKa = 4.8

Molecular weight: 23.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|N4TI04|N4TI04_FUSC1 Uncharacterized protein OS=Fusarium oxysporum f. sp. cubense (strain race 1) OX=1229664 GN=FOC1_g10015191 PE=4 SV=1
MM1 pKa = 7.86PLTRR5 pKa = 11.84THH7 pKa = 6.63RR8 pKa = 11.84HH9 pKa = 4.04TAPRR13 pKa = 11.84RR14 pKa = 11.84SIFSTRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84APAHH26 pKa = 4.84SHH28 pKa = 5.33RR29 pKa = 11.84HH30 pKa = 4.03TTTTTTTTTKK40 pKa = 9.5PRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84GMFGGGAGRR53 pKa = 11.84RR54 pKa = 11.84THH56 pKa = 6.46ATTTAPVHH64 pKa = 4.87HH65 pKa = 6.63HH66 pKa = 5.14QRR68 pKa = 11.84RR69 pKa = 11.84PSMKK73 pKa = 10.02DD74 pKa = 2.95KK75 pKa = 11.41VSGALLKK82 pKa = 11.04LKK84 pKa = 10.68GSLTRR89 pKa = 11.84RR90 pKa = 11.84PGVKK94 pKa = 9.89AAGTRR99 pKa = 11.84RR100 pKa = 11.84MRR102 pKa = 11.84GTDD105 pKa = 3.02GRR107 pKa = 11.84GARR110 pKa = 11.84HH111 pKa = 5.87HH112 pKa = 7.23RR113 pKa = 11.84YY114 pKa = 9.44

Molecular weight: 12.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15355

0

15355

6888665

23

6825

448.6

49.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.358 ± 0.017

1.32 ± 0.008

5.802 ± 0.014

6.169 ± 0.02

3.835 ± 0.013

6.828 ± 0.019

2.376 ± 0.009

5.198 ± 0.013

5.044 ± 0.018

8.851 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.243 ± 0.007

3.796 ± 0.01

5.837 ± 0.026

3.971 ± 0.014

5.775 ± 0.017

7.992 ± 0.022

6.007 ± 0.025

6.135 ± 0.015

1.579 ± 0.008

2.852 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski