Propionibacterium australiense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Propionibacterium

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2569 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A383S3N0|A0A383S3N0_9ACTN ABC transporter OS=Propionibacterium australiense OX=119981 GN=yusV_3 PE=4 SV=1
MM1 pKa = 6.89NTTHH5 pKa = 7.43RR6 pKa = 11.84GLTRR10 pKa = 11.84RR11 pKa = 11.84FAAFAGLGAVGAMMLTACSGDD32 pKa = 3.86DD33 pKa = 3.65EE34 pKa = 4.8LVDD37 pKa = 3.61MGIPMSDD44 pKa = 2.79GTYY47 pKa = 9.41TGQSNEE53 pKa = 4.26DD54 pKa = 3.56DD55 pKa = 3.62QGSVGTVTITVEE67 pKa = 3.67GGRR70 pKa = 11.84IIEE73 pKa = 4.17ASYY76 pKa = 8.86EE77 pKa = 4.3TVEE80 pKa = 4.51SDD82 pKa = 3.89GTVKK86 pKa = 10.86DD87 pKa = 3.67EE88 pKa = 4.73NYY90 pKa = 10.77GKK92 pKa = 10.35DD93 pKa = 3.32SSGEE97 pKa = 3.84IANAEE102 pKa = 4.21YY103 pKa = 10.4YY104 pKa = 10.38QRR106 pKa = 11.84AQAAVASYY114 pKa = 8.98EE115 pKa = 4.15QYY117 pKa = 10.97SAALVEE123 pKa = 4.62AQDD126 pKa = 3.71PTAVDD131 pKa = 4.44TISGATVAHH140 pKa = 5.74SQFLQAALRR149 pKa = 11.84AVYY152 pKa = 9.36QAQGVEE158 pKa = 3.98DD159 pKa = 4.93DD160 pKa = 4.59GRR162 pKa = 11.84ADD164 pKa = 4.13TINMPGLGLEE174 pKa = 4.59DD175 pKa = 3.5EE176 pKa = 5.63DD177 pKa = 4.62YY178 pKa = 11.72

Molecular weight: 18.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A383S5E2|A0A383S5E2_9ACTN Fer4_NifH OS=Propionibacterium australiense OX=119981 GN=NCTC13651_00514 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.55LLKK22 pKa = 8.44KK23 pKa = 9.1TRR25 pKa = 11.84IQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84AGKK33 pKa = 9.79

Molecular weight: 4.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2569

0

2569

845120

21

2591

329.0

35.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.553 ± 0.064

0.976 ± 0.014

6.099 ± 0.041

5.752 ± 0.042

2.842 ± 0.029

9.144 ± 0.045

2.106 ± 0.023

4.468 ± 0.038

2.054 ± 0.039

9.921 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.261 ± 0.023

2.186 ± 0.027

5.376 ± 0.031

3.156 ± 0.032

7.465 ± 0.053

5.63 ± 0.036

6.024 ± 0.043

8.4 ± 0.045

1.502 ± 0.022

2.075 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski