Chryseobacterium frigidisoli

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2760 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I3FCI3|A0A1I3FCI3_9FLAO Glycosyltransferase involved in cell wall bisynthesis OS=Chryseobacterium frigidisoli OX=1125876 GN=SAMN05443292_1288 PE=4 SV=1
MM1 pKa = 7.38QDD3 pKa = 2.87INIKK7 pKa = 8.6ITDD10 pKa = 3.77RR11 pKa = 11.84NGEE14 pKa = 3.91LHH16 pKa = 6.49EE17 pKa = 4.49VVVPTDD23 pKa = 3.08MSMNLMEE30 pKa = 4.96VIRR33 pKa = 11.84SYY35 pKa = 11.07EE36 pKa = 3.71IAEE39 pKa = 4.21EE40 pKa = 4.57GTVGVCGGMAMCASCQVYY58 pKa = 9.55VEE60 pKa = 4.46NDD62 pKa = 2.83FDD64 pKa = 4.77LPEE67 pKa = 4.21MDD69 pKa = 4.43AEE71 pKa = 4.16EE72 pKa = 4.44DD73 pKa = 3.61AMLGEE78 pKa = 4.98AYY80 pKa = 9.82HH81 pKa = 5.29VQEE84 pKa = 4.36NSRR87 pKa = 11.84LGCQIHH93 pKa = 7.09INSQLDD99 pKa = 3.56GLEE102 pKa = 4.51VIVAPYY108 pKa = 9.13PP109 pKa = 3.52

Molecular weight: 12.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I3HZI2|A0A1I3HZI2_9FLAO Glycosyltransferase involved in cell wall bisynthesis OS=Chryseobacterium frigidisoli OX=1125876 GN=SAMN05443292_2479 PE=4 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.03RR4 pKa = 11.84TFQPSEE10 pKa = 3.58RR11 pKa = 11.84KK12 pKa = 9.37KK13 pKa = 10.2RR14 pKa = 11.84NKK16 pKa = 9.71HH17 pKa = 4.09GFRR20 pKa = 11.84EE21 pKa = 4.33RR22 pKa = 11.84MSTPNGRR29 pKa = 11.84RR30 pKa = 11.84VLAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.13GRR40 pKa = 11.84RR41 pKa = 11.84SLTVSSQRR49 pKa = 11.84AKK51 pKa = 10.63RR52 pKa = 3.54

Molecular weight: 6.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2760

0

2760

896055

32

2402

324.7

36.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.059 ± 0.052

0.732 ± 0.013

5.421 ± 0.036

6.636 ± 0.058

5.887 ± 0.045

6.166 ± 0.053

1.501 ± 0.018

8.167 ± 0.047

8.745 ± 0.061

9.328 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.21 ± 0.024

6.705 ± 0.051

3.268 ± 0.026

3.349 ± 0.027

3.03 ± 0.03

6.742 ± 0.038

5.378 ± 0.039

5.781 ± 0.035

0.968 ± 0.015

3.928 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski