Arthrobacter sp. AQ5-06

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Arthrobacter; unclassified Arthrobacter

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3663 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A329YWA5|A0A329YWA5_9MICC Dioxygenase OS=Arthrobacter sp. AQ5-06 OX=1914304 GN=DQ354_05900 PE=4 SV=1
MM1 pKa = 7.26SRR3 pKa = 11.84ALIIVDD9 pKa = 3.67VQNDD13 pKa = 3.63FCEE16 pKa = 4.88GGSLAVAGGADD27 pKa = 3.35VAGAISEE34 pKa = 4.4YY35 pKa = 11.07VDD37 pKa = 3.12AHH39 pKa = 6.32HH40 pKa = 7.08NEE42 pKa = 3.83FDD44 pKa = 4.95HH45 pKa = 7.69IVATQDD51 pKa = 2.79WHH53 pKa = 6.82IDD55 pKa = 3.55PGAHH59 pKa = 7.19FSDD62 pKa = 4.03TPDD65 pKa = 5.22LKK67 pKa = 11.15DD68 pKa = 2.99SWPRR72 pKa = 11.84HH73 pKa = 5.09CVAGTRR79 pKa = 11.84GAEE82 pKa = 3.94LHH84 pKa = 7.04PDD86 pKa = 3.53LDD88 pKa = 3.77TEE90 pKa = 4.48YY91 pKa = 10.49IQAYY95 pKa = 5.92FQKK98 pKa = 10.57GQFAAAYY105 pKa = 9.64SGFEE109 pKa = 3.96GLLAPEE115 pKa = 4.76DD116 pKa = 3.76AVPTGEE122 pKa = 4.18RR123 pKa = 11.84QPGAMPADD131 pKa = 3.82ADD133 pKa = 3.94AYY135 pKa = 10.75APADD139 pKa = 3.68NAIGLDD145 pKa = 3.67DD146 pKa = 4.2WLQSHH151 pKa = 6.64DD152 pKa = 3.82VEE154 pKa = 4.63DD155 pKa = 4.06VVVVGIATDD164 pKa = 3.76YY165 pKa = 11.34CVMATSLDD173 pKa = 3.78AVQAGYY179 pKa = 10.47SVTVIRR185 pKa = 11.84SLTAGIAEE193 pKa = 4.39DD194 pKa = 4.94LEE196 pKa = 4.53DD197 pKa = 4.4AVAEE201 pKa = 4.13MEE203 pKa = 4.3LGGVEE208 pKa = 4.36VAA210 pKa = 5.23

Molecular weight: 22.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A329YNQ4|A0A329YNQ4_9MICC Threonine/serine exporter family protein OS=Arthrobacter sp. AQ5-06 OX=1914304 GN=DQ354_12960 PE=4 SV=1
MM1 pKa = 7.61KK2 pKa = 10.31VRR4 pKa = 11.84NSLRR8 pKa = 11.84ALKK11 pKa = 9.72KK12 pKa = 10.42VPGAQIVRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84GRR24 pKa = 11.84TFVINKK30 pKa = 9.03KK31 pKa = 8.56NPRR34 pKa = 11.84MKK36 pKa = 10.47ARR38 pKa = 11.84QGG40 pKa = 3.24

Molecular weight: 4.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3663

0

3663

1169135

24

3558

319.2

34.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.029 ± 0.056

0.628 ± 0.011

5.642 ± 0.036

5.544 ± 0.037

3.225 ± 0.027

9.081 ± 0.035

2.099 ± 0.02

4.408 ± 0.031

2.821 ± 0.03

10.24 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.042 ± 0.017

2.523 ± 0.026

5.425 ± 0.033

3.174 ± 0.022

6.427 ± 0.038

5.948 ± 0.028

5.91 ± 0.031

8.357 ± 0.036

1.408 ± 0.02

2.07 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski