Propioniciclava tarda

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Propioniciclava

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2684 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q9KJE0|A0A4Q9KJE0_9ACTN VOC family protein OS=Propioniciclava tarda OX=433330 GN=ET996_10155 PE=4 SV=1
MM1 pKa = 7.63PVTMSEE7 pKa = 4.01EE8 pKa = 3.67RR9 pKa = 11.84FAALVEE15 pKa = 4.08QALDD19 pKa = 4.73DD20 pKa = 4.37IPDD23 pKa = 3.87EE24 pKa = 4.32LSSLIEE30 pKa = 3.88NCLIVVDD37 pKa = 5.22DD38 pKa = 5.36DD39 pKa = 5.49APADD43 pKa = 4.2DD44 pKa = 5.58PDD46 pKa = 5.12LLGLYY51 pKa = 10.3DD52 pKa = 5.49GIPLTEE58 pKa = 4.22RR59 pKa = 11.84GMDD62 pKa = 3.45YY63 pKa = 10.87SGYY66 pKa = 10.68LPDD69 pKa = 4.61TIHH72 pKa = 6.87IFRR75 pKa = 11.84RR76 pKa = 11.84NILAACDD83 pKa = 3.64TEE85 pKa = 4.19TDD87 pKa = 3.76VVEE90 pKa = 4.12EE91 pKa = 4.26VYY93 pKa = 9.33ITVVHH98 pKa = 6.2EE99 pKa = 3.98VAHH102 pKa = 6.16FFGIDD107 pKa = 3.5DD108 pKa = 3.89EE109 pKa = 5.32RR110 pKa = 11.84LDD112 pKa = 3.83EE113 pKa = 5.21LGYY116 pKa = 11.23AA117 pKa = 4.27

Molecular weight: 13.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q9KLZ3|A0A4Q9KLZ3_9ACTN Argininosuccinate lyase OS=Propioniciclava tarda OX=433330 GN=argH PE=3 SV=1
MM1 pKa = 7.46PRR3 pKa = 11.84HH4 pKa = 5.46RR5 pKa = 11.84TRR7 pKa = 11.84SRR9 pKa = 11.84TPAQRR14 pKa = 11.84TPRR17 pKa = 11.84RR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84PHH22 pKa = 5.89PRR24 pKa = 11.84PPRR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84GRR31 pKa = 11.84PRR33 pKa = 11.84PRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84ARR39 pKa = 11.84PPAQRR44 pKa = 11.84QPRR47 pKa = 11.84HH48 pKa = 6.31RR49 pKa = 11.84GRR51 pKa = 11.84GGAPWRR57 pKa = 11.84LRR59 pKa = 11.84DD60 pKa = 3.69RR61 pKa = 11.84RR62 pKa = 11.84GGRR65 pKa = 11.84PP66 pKa = 3.08

Molecular weight: 8.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2684

0

2684

874148

24

2381

325.7

34.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.589 ± 0.066

0.794 ± 0.013

6.16 ± 0.036

5.041 ± 0.041

2.986 ± 0.026

8.909 ± 0.043

2.002 ± 0.021

4.113 ± 0.031

2.497 ± 0.038

10.312 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.943 ± 0.024

2.039 ± 0.024

5.59 ± 0.038

2.811 ± 0.025

7.158 ± 0.057

5.609 ± 0.033

5.99 ± 0.045

8.931 ± 0.048

1.52 ± 0.019

2.005 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski