Candidatus Deianiraea vastatrix

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Deianiraeaceae; Candidatus Deianiraea

Average proteome isoelectric point is 7.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1126 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B8XI47|A0A5B8XI47_9RICK 50S ribosomal protein L35 OS=Candidatus Deianiraea vastatrix OX=2163644 GN=Deia_00623 PE=4 SV=1
MM1 pKa = 7.49IWRR4 pKa = 11.84EE5 pKa = 4.02MFNFSQDD12 pKa = 3.25CVLMVLASDD21 pKa = 4.76YY22 pKa = 10.7YY23 pKa = 11.25DD24 pKa = 3.26EE25 pKa = 4.77SEE27 pKa = 4.15YY28 pKa = 10.55VRR30 pKa = 11.84NYY32 pKa = 10.99EE33 pKa = 4.28EE34 pKa = 4.27FLKK37 pKa = 10.97LVNVV41 pKa = 4.28

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B8XD90|A0A5B8XD90_9RICK Tetratricopeptide repeat protein OS=Candidatus Deianiraea vastatrix OX=2163644 GN=Deia_00544 PE=4 SV=1
MM1 pKa = 7.46LRR3 pKa = 11.84TYY5 pKa = 10.51QPSKK9 pKa = 9.22RR10 pKa = 11.84KK11 pKa = 9.44RR12 pKa = 11.84RR13 pKa = 11.84NSHH16 pKa = 5.08GFRR19 pKa = 11.84ARR21 pKa = 11.84MSTKK25 pKa = 9.96GGRR28 pKa = 11.84KK29 pKa = 8.65VLSNRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.36GRR39 pKa = 11.84HH40 pKa = 5.57SIAII44 pKa = 3.9

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1126

0

1126

365583

30

3323

324.7

36.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.887 ± 0.069

1.519 ± 0.032

5.779 ± 0.06

5.938 ± 0.077

5.178 ± 0.064

5.832 ± 0.087

1.675 ± 0.029

10.119 ± 0.111

9.01 ± 0.084

8.248 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.57 ± 0.036

6.685 ± 0.093

2.731 ± 0.043

3.557 ± 0.102

3.324 ± 0.054

7.42 ± 0.074

4.699 ± 0.063

5.511 ± 0.07

0.599 ± 0.018

3.718 ± 0.054
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski