Dishui Lake phycodnavirus 2

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Algavirales; Phycodnaviridae; unclassified Phycodnaviridae

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 188 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G6XP48|A0A6G6XP48_9PHYC Uncharacterized protein OS=Dishui Lake phycodnavirus 2 OX=2704071 PE=4 SV=1
MM1 pKa = 7.1VWSQYY6 pKa = 10.35VYY8 pKa = 10.19EE9 pKa = 4.66ASAGLDD15 pKa = 3.01VDD17 pKa = 4.57APPAVLSSDD26 pKa = 5.06DD27 pKa = 3.97DD28 pKa = 4.67AADD31 pKa = 3.35QDD33 pKa = 4.01VGLNICDD40 pKa = 3.48WQLKK44 pKa = 9.25YY45 pKa = 10.71SEE47 pKa = 4.81EE48 pKa = 4.06LWDD51 pKa = 3.55IWDD54 pKa = 3.91LMKK57 pKa = 10.36MLIRR61 pKa = 11.84DD62 pKa = 3.72AFLEE66 pKa = 4.39HH67 pKa = 6.64TLLTHH72 pKa = 7.75DD73 pKa = 3.75YY74 pKa = 8.72CTYY77 pKa = 10.1NDD79 pKa = 3.76FVEE82 pKa = 5.16FCYY85 pKa = 10.36YY86 pKa = 10.77DD87 pKa = 3.08HH88 pKa = 7.05YY89 pKa = 11.54GVEE92 pKa = 4.95EE93 pKa = 4.15YY94 pKa = 10.12TGPVPFRR101 pKa = 11.84EE102 pKa = 3.89NLRR105 pKa = 11.84YY106 pKa = 9.76IWMVVWNEE114 pKa = 3.66MKK116 pKa = 10.91YY117 pKa = 11.06LDD119 pKa = 4.48FAPGANFSHH128 pKa = 6.68FVQWVVEE135 pKa = 3.97HH136 pKa = 6.78SEE138 pKa = 4.17INNLTLL144 pKa = 4.26

Molecular weight: 17.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G6XNR6|A0A6G6XNR6_9PHYC Uncharacterized protein OS=Dishui Lake phycodnavirus 2 OX=2704071 PE=4 SV=1
MM1 pKa = 8.14IEE3 pKa = 3.95VKK5 pKa = 10.42LIKK8 pKa = 10.55SPSPKK13 pKa = 9.86HH14 pKa = 5.58KK15 pKa = 10.01FRR17 pKa = 11.84VIFRR21 pKa = 11.84TGRR24 pKa = 11.84YY25 pKa = 8.0VDD27 pKa = 4.03FGGRR31 pKa = 11.84GYY33 pKa = 11.19SDD35 pKa = 3.44YY36 pKa = 10.35TIHH39 pKa = 6.35KK40 pKa = 7.79TPEE43 pKa = 3.44RR44 pKa = 11.84MRR46 pKa = 11.84LYY48 pKa = 10.5VLRR51 pKa = 11.84HH52 pKa = 5.68GGRR55 pKa = 11.84VPSGLWKK62 pKa = 8.21EE63 pKa = 4.26TRR65 pKa = 11.84RR66 pKa = 11.84TVIQRR71 pKa = 11.84GMLSVNTSRR80 pKa = 11.84KK81 pKa = 8.99EE82 pKa = 3.75LWTGAGVGTAGFWSRR97 pKa = 11.84WLLWSYY103 pKa = 11.17PSLDD107 pKa = 3.65DD108 pKa = 3.89AKK110 pKa = 11.21KK111 pKa = 9.55FMSRR115 pKa = 11.84KK116 pKa = 8.88FQIKK120 pKa = 7.77FTNVV124 pKa = 2.36

Molecular weight: 14.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

188

0

188

51000

54

2586

271.3

30.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.637 ± 0.373

1.739 ± 0.162

5.804 ± 0.198

6.131 ± 0.218

4.431 ± 0.166

6.324 ± 0.296

2.167 ± 0.113

5.649 ± 0.193

6.653 ± 0.421

8.224 ± 0.19

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.763 ± 0.139

5.608 ± 0.392

4.133 ± 0.172

3.52 ± 0.108

4.875 ± 0.213

6.094 ± 0.227

6.557 ± 0.313

7.308 ± 0.184

1.163 ± 0.078

4.222 ± 0.141
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski