Stenotrophomonas daejeonensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2805 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R0EC49|A0A0R0EC49_9GAMM Glucose dehydrogenase OS=Stenotrophomonas daejeonensis OX=659018 GN=ABB34_00055 PE=4 SV=1
MM1 pKa = 7.73SDD3 pKa = 3.12ASASTFRR10 pKa = 11.84TWMCVVCGFIYY21 pKa = 10.55SEE23 pKa = 4.21ADD25 pKa = 3.27GLPEE29 pKa = 3.94EE30 pKa = 5.59GIAAGTRR37 pKa = 11.84WADD40 pKa = 3.95VPDD43 pKa = 3.6TWTCPDD49 pKa = 3.84CGATKK54 pKa = 10.71DD55 pKa = 3.72DD56 pKa = 4.2FEE58 pKa = 4.49MVEE61 pKa = 4.23LDD63 pKa = 3.29

Molecular weight: 6.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R0DXW9|A0A0R0DXW9_9GAMM Histidinol dehydrogenase OS=Stenotrophomonas daejeonensis OX=659018 GN=hisD PE=3 SV=1
MM1 pKa = 6.79NTVTQGLDD9 pKa = 3.09RR10 pKa = 11.84PASPRR15 pKa = 11.84LPGLLLAAAIAGLSAWLGNLPPLQAHH41 pKa = 7.47GIGTLTLAIALGIAAGNAFPDD62 pKa = 4.02ALSSRR67 pKa = 11.84ASAGVDD73 pKa = 3.91FAKK76 pKa = 9.87GTLLRR81 pKa = 11.84AGIVLYY87 pKa = 9.89GLRR90 pKa = 11.84LTLQDD95 pKa = 3.42VAQVGLRR102 pKa = 11.84GVLVDD107 pKa = 5.05ALVLCSTFALACWLGCRR124 pKa = 11.84VLKK127 pKa = 10.69LEE129 pKa = 4.94RR130 pKa = 11.84GTALLIGAGSSICGAAAVMATAPVVKK156 pKa = 10.34GRR158 pKa = 11.84AEE160 pKa = 3.82QAAVAVATVVVFGTLAMFAYY180 pKa = 9.42PLLYY184 pKa = 9.98RR185 pKa = 11.84WGVGAGWMPLDD196 pKa = 3.6EE197 pKa = 5.97AGFGVFTGATVHH209 pKa = 6.47EE210 pKa = 4.72VAQVVAAGRR219 pKa = 11.84AIGPQAADD227 pKa = 3.05AAVIAKK233 pKa = 9.21LVRR236 pKa = 11.84VMMLAPFLLGLSLLLARR253 pKa = 11.84GRR255 pKa = 11.84KK256 pKa = 6.9TVDD259 pKa = 3.13GPRR262 pKa = 11.84PAITVPWFAFGFIGMVAFNSLRR284 pKa = 11.84LLPAPLVEE292 pKa = 4.57ALVGLDD298 pKa = 3.4TALLAMAMAALGLTTRR314 pKa = 11.84ASALRR319 pKa = 11.84RR320 pKa = 11.84AGPRR324 pKa = 11.84PMLLAALLFAWLLGGGMLINLAIHH348 pKa = 7.02ALPP351 pKa = 4.46

Molecular weight: 35.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2805

0

2805

929062

36

2910

331.2

35.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.18 ± 0.066

0.812 ± 0.015

5.801 ± 0.035

5.431 ± 0.041

3.347 ± 0.028

8.784 ± 0.044

2.297 ± 0.026

3.971 ± 0.035

2.701 ± 0.041

11.201 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.223 ± 0.024

2.542 ± 0.029

5.333 ± 0.035

3.974 ± 0.03

7.689 ± 0.048

4.807 ± 0.035

4.618 ± 0.035

7.452 ± 0.037

1.578 ± 0.021

2.259 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski