Candidatus Syntrophoarchaeum caldarius

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia; Methanosarcinales; unclassified Methanosarcinales; ANME-2 cluster; Candidatus Syntrophoarchaeum

Average proteome isoelectric point is 5.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1784 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1F2PBC4|A0A1F2PBC4_9EURY Ribonuclease P protein component 4 OS=Candidatus Syntrophoarchaeum caldarius OX=1838285 GN=rnp4 PE=3 SV=1
MM1 pKa = 7.23SVKK4 pKa = 10.32SGEE7 pKa = 4.23SSTITVTVTSEE18 pKa = 3.87GNTIADD24 pKa = 3.67ANVILSSTDD33 pKa = 3.83GIFSPDD39 pKa = 3.59SGITDD44 pKa = 3.38AGGIFTAIYY53 pKa = 7.04TAPSVSSDD61 pKa = 2.78ATYY64 pKa = 10.76AIAVDD69 pKa = 3.99VTKK72 pKa = 10.8VGYY75 pKa = 7.29TQGSSSIDD83 pKa = 3.02ITVEE87 pKa = 3.43ADD89 pKa = 3.05EE90 pKa = 5.12GEE92 pKa = 3.98KK93 pKa = 10.96GMRR96 pKa = 11.84DD97 pKa = 2.91NYY99 pKa = 10.58YY100 pKa = 10.34RR101 pKa = 11.84GGGAPRR107 pKa = 11.84DD108 pKa = 3.89SDD110 pKa = 3.57GDD112 pKa = 4.05GYY114 pKa = 11.64SDD116 pKa = 3.68IQEE119 pKa = 4.58MIAGTDD125 pKa = 3.38PDD127 pKa = 5.19DD128 pKa = 4.27PSSYY132 pKa = 10.42PGVLPEE138 pKa = 4.72TPTPTITATPAPSPATITTATPTPTPTQTPTATPTSTPGQPIPISWVVIGIILLVLLGIIAAYY201 pKa = 9.64IYY203 pKa = 9.99IQRR206 pKa = 11.84RR207 pKa = 3.33

Molecular weight: 21.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1F2PDB9|A0A1F2PDB9_9EURY Metal-dependent phosphoesterase OS=Candidatus Syntrophoarchaeum caldarius OX=1838285 GN=SCAL_000312 PE=4 SV=1
MM1 pKa = 7.16YY2 pKa = 10.23NRR4 pKa = 11.84SAVEE8 pKa = 4.74RR9 pKa = 11.84FNAWIEE15 pKa = 4.12SFKK18 pKa = 10.82RR19 pKa = 11.84ILVRR23 pKa = 11.84FEE25 pKa = 3.86RR26 pKa = 11.84LAVCFMAAVNLACIRR41 pKa = 11.84MVLRR45 pKa = 11.84VLKK48 pKa = 10.75

Molecular weight: 5.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1784

0

1784

510543

34

2615

286.2

31.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.227 ± 0.068

1.246 ± 0.029

6.205 ± 0.046

8.02 ± 0.069

3.907 ± 0.04

7.691 ± 0.047

1.777 ± 0.026

8.694 ± 0.056

5.866 ± 0.07

9.312 ± 0.075

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.68 ± 0.031

3.514 ± 0.07

3.914 ± 0.032

1.937 ± 0.023

5.525 ± 0.056

5.749 ± 0.055

5.196 ± 0.067

7.304 ± 0.044

0.924 ± 0.021

3.228 ± 0.042
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski