Acinetobacter phage vB_AbaM_B09_Aci05

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Saclayvirus; Acinetobacter virus Aci05

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 160 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A386KB62|A0A386KB62_9CAUD Uncharacterized protein OS=Acinetobacter phage vB_AbaM_B09_Aci05 OX=2315458 GN=Aci05_147 PE=4 SV=1
MM1 pKa = 7.71LYY3 pKa = 10.77SLVLVVFLSNGSEE16 pKa = 4.49DD17 pKa = 3.49RR18 pKa = 11.84TTLAKK23 pKa = 10.44NYY25 pKa = 9.72QDD27 pKa = 3.72YY28 pKa = 11.42SCIDD32 pKa = 3.07SRR34 pKa = 11.84DD35 pKa = 3.63VVRR38 pKa = 11.84SQLDD42 pKa = 3.55YY43 pKa = 11.67YY44 pKa = 11.7NNLEE48 pKa = 4.22SKK50 pKa = 11.09GDD52 pKa = 3.58VEE54 pKa = 5.21FVDD57 pKa = 5.21VEE59 pKa = 4.47CEE61 pKa = 3.86AQKK64 pKa = 11.33DD65 pKa = 4.17FII67 pKa = 5.94

Molecular weight: 7.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A386KC19|A0A386KC19_9CAUD Ribonucleoside-diphosphate reductase OS=Acinetobacter phage vB_AbaM_B09_Aci05 OX=2315458 GN=Aci05_081 PE=3 SV=1
MM1 pKa = 7.96RR2 pKa = 11.84NTSIVKK8 pKa = 10.06RR9 pKa = 11.84GEE11 pKa = 3.83FKK13 pKa = 10.96HH14 pKa = 6.38RR15 pKa = 11.84VQLPKK20 pKa = 10.7GVNEE24 pKa = 4.31RR25 pKa = 11.84EE26 pKa = 3.68KK27 pKa = 11.31QMFIKK32 pKa = 10.44FAKK35 pKa = 10.07SVNQGLFKK43 pKa = 11.06VV44 pKa = 3.96

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

160

0

160

30291

37

2223

189.3

21.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.107 ± 0.298

1.258 ± 0.123

6.646 ± 0.171

7.316 ± 0.261

4.404 ± 0.198

6.738 ± 0.145

2.017 ± 0.166

6.523 ± 0.143

7.943 ± 0.266

7.963 ± 0.174

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.687 ± 0.136

5.157 ± 0.192

2.899 ± 0.114

3.463 ± 0.163

4.387 ± 0.147

6.309 ± 0.226

5.398 ± 0.25

7.081 ± 0.19

1.4 ± 0.079

4.305 ± 0.138
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski