Candidatus Rhabdochlamydia sp. T3358

Taxonomy: cellular organisms; Bacteria; PVC group; Chlamydiae; Chlamydiia; Parachlamydiales; Rhabdochlamydiaceae; Candidatus Rhabdochlamydia; unclassified Candidatus Rhabdochlamydia

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1685 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A486XKV8|A0A486XKV8_9BACT Uncharacterized protein OS=Candidatus Rhabdochlamydia sp. T3358 OX=2099795 GN=RHT_00759 PE=4 SV=1
MM1 pKa = 7.49IGAINSNLRR10 pKa = 11.84TYY12 pKa = 10.87GAGPSSEE19 pKa = 4.7ADD21 pKa = 3.31TSEE24 pKa = 4.15STAQTSLHH32 pKa = 6.56SEE34 pKa = 4.47DD35 pKa = 3.92NTDD38 pKa = 3.53ATNQSNEE45 pKa = 4.04TNTEE49 pKa = 3.5VDD51 pKa = 3.57NQTCSYY57 pKa = 10.48NDD59 pKa = 3.88SITNNDD65 pKa = 3.62YY66 pKa = 11.1GCQHH70 pKa = 6.63NGQAGVSAWDD80 pKa = 3.38IAEE83 pKa = 4.68HH84 pKa = 6.38IGNGEE89 pKa = 3.89WGSAARR95 pKa = 11.84DD96 pKa = 3.63VFEE99 pKa = 5.82SSDD102 pKa = 3.51TTGSNNSDD110 pKa = 2.93NTTADD115 pKa = 3.33NASATEE121 pKa = 4.06KK122 pKa = 11.01

Molecular weight: 12.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A486XL47|A0A486XL47_9BACT Oligopeptide-binding protein OppA OS=Candidatus Rhabdochlamydia sp. T3358 OX=2099795 GN=oppA_5 PE=4 SV=1
MM1 pKa = 6.91VKK3 pKa = 10.24KK4 pKa = 9.57RR5 pKa = 11.84TTKK8 pKa = 9.36KK9 pKa = 8.2TGARR13 pKa = 11.84KK14 pKa = 6.71TAKK17 pKa = 8.97RR18 pKa = 11.84TARR21 pKa = 11.84KK22 pKa = 7.42TGARR26 pKa = 11.84KK27 pKa = 6.09TTAKK31 pKa = 9.29RR32 pKa = 11.84TVRR35 pKa = 11.84KK36 pKa = 7.27TARR39 pKa = 11.84KK40 pKa = 6.02TARR43 pKa = 11.84RR44 pKa = 11.84TTKK47 pKa = 10.2RR48 pKa = 11.84ATARR52 pKa = 11.84RR53 pKa = 11.84KK54 pKa = 9.63

Molecular weight: 6.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1685

0

1685

544409

29

2825

323.1

36.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.627 ± 0.05

1.499 ± 0.019

4.521 ± 0.039

6.617 ± 0.06

5.105 ± 0.054

5.519 ± 0.079

2.374 ± 0.027

7.888 ± 0.049

7.412 ± 0.061

11.26 ± 0.074

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.108 ± 0.025

4.31 ± 0.047

4.039 ± 0.039

4.595 ± 0.039

4.149 ± 0.044

7.074 ± 0.051

5.0 ± 0.047

5.353 ± 0.043

1.145 ± 0.023

3.406 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski